Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0506 ATGGACAAGGCAGAGAAAGCTATGCGGAAGAGCTACTTTGATGTCTTGGGTTTGTGCTGTTCTTCGGAAGTTCCGTTAATTGAAAACATCTTGAGACCTCTCCAAGGAATCAAAGAGGTTTCAGTCATCGTTCCATCACGAACCGTCATTGTTGTCCATGACACTCTTGTGATTTCGCAACTTCAAATTGTTAAGGCACTGAATGAAGCAAGGCTAGAAGCAAATATCAGAGTGTATGGGGACGAAAAGCACCAAAAGAGATGGCCAAGCCCTTACTCAATTGCCTCTGGAGTGTTACTTTTGCTTTCTCTCCTCAAATTTGTGTTCCATCCCTTGAAATATTTGGCACTAGGAGCAGTTGCTGTTGCTGTCTATCCTCTCATCTTAAAGGCCATTGTCTCCATTCGGAACCTTAGGCTGGACATCAACATTCTTATGCTCATTGCAGTTATTGGGACAATTTCTATGAATCATTATTTGGAAGCCGGCACCATTGTTTTCCTCTTCTCAATTGCACAATGGCTAGAGTCAAGCGCAAGCCACAAGGCAACTGCAGTAATGTCATCTTTGATGAACATAGCCCCTCAAAAAGCAGTCATAGCTGAAACCGGAGAGGTTGTGGATGCTGATGAGGTGAAAATAAACACCGTTTTAGAAGTTAAAGCAGGCGAGGTGATACCCATTGATGGTGTTGTGATAGATGGAATCTGTGAAGTTGATGAGAAAAAATTGACTGGGGAATCATTCCCTGTGGCAAAACAAAAGGATTCTACTGTATGGGCTGGCACCATCAATTTAAATGGTTATATTAGTGTGAAAACTACTGCACTAGCTGAGGATTGTGTGATGGCTAAAATGGCAAAGCTTGTTGAAGAAGCTCAAAACAGCAAAACCAACATCCAGAGATTGATTGACAAGTTTGCCCAGTTTTATACCCCAGGCGTTGTAATCATATCAGCTCTTGTAGCGGTGATTCCACTTGCGCTAAAACAACATAACCATAAACTTTGGCTTCAGTTTTCGCTGGTTGTTTTAGTAAGTGCATGTCCATGTGCACTCATCCTTTCAACGCCAGTTGCAACTTTTTGTGCTTACACCAAAGCAGCCACATCAGGTCTTCTCATCAAAGGGGGTGATCATCTTGAAACACTTGCCAAAATTAAGGTCATGGCCTTTGACAAAACGGGTACCATAACGAAGGGTGAATTTGTGGTCACACATTTTCAATCTCTTTCAGATGACATTGATTTCAACACATTGGCTTACTGGGTGTCAAGCATAGAGAGCAAGTCAAGCCATCCATCGGCAGCAGCAATTGTTGATTATGGAAGGTCTCTCTCCGTTGAACCAGAGCCAGAAAAGGTGACAGAATTTGAAATTTTCCCTGGCGAAGGAATATGTGGGAAAATTGAAGGCAGAGTTATTTACATTGGAAATAAAAGAATTGCCGCAAGAGCTGGGTCTGAAACAGTTCCTATCTTACAAGGTGAAGTTGAAAGAGGAAAGACCACGGGATACATATACTTGGGAGCAATCCCAATTGGATTTTTCTCTCTTTCAGATGCTTGCAGATTAAGAGTTCAGGAGGCAATAGGACAGTTGAAGTCATTGGGAATCAAAACCGCTATGCTCACTGGAGATAATCAATCTGCTGCGATGCAAGTACAGGATGAGCTGGGGCATTCTCTTGAGTTAGTTCATGCAGAACTTTTGCCAGAGGACAAGGTGAAAATCATCTCAGAATTTAAGAAGGAAGGTCCAACAGCCATGGTTGGGGACGGCCTAAACGACGCGCCGGCATTGGCTGCAGCTGATATTGGAATCTCGATGGGCATTTCAGGTTCTGCATTGGCAAGTGAGACGGGCAATATAATTCTTATGTCCAATGACATTATGAAGATACCAGAAGCCATTAAGCTTGCAAGAAAAGCTAGTAGGAAAGTGGTAGAAAACATTGTTTTTTCAATCATGACTAAGGCTGCGATTCTTGATTTGGCCATTGGTGGTCATCCACTTGTTTGGGCAGCAGTTGTGGCTGATGTTGGAACATGCCTATTGGTCATCTTTAACAGCATGTTACTTCTGCGAAAAGGACACAACCATGGAGGAAAATGTTGTAGATCTTCTACTAAACCGCATAACCACAAAAATGGATGTGGTGGCTCTCATGATAATTCCTCTCATCATCACCATCATCATGAGCATGATCAACATCAACATGAAGATCATAGCCACAAACGTTGTTGCTCAGAAAAGACAAAAAAATTGTTCCCACCTCAGAAATGTGGTGGTGCTCATGGCAGTTCCTCTCATCATCATCATCACCACCGTCAACATCAACATGAATACCATAACCATGACCAACACGATCAACATCATCAGAAGTGTGCCTCACAAACAAGTTTCTCAACATGTCCACCCTGCTCTTGA 2430 0.4267 MDKAEKAMRKSYFDVLGLCCSSEVPLIENILRPLQGIKEVSVIVPSRTVIVVHDTLVISQLQIVKALNEARLEANIRVYGDEKHQKRWPSPYSIASGVLLLLSLLKFVFHPLKYLALGAVAVAVYPLILKAIVSIRNLRLDINILMLIAVIGTISMNHYLEAGTIVFLFSIAQWLESSASHKATAVMSSLMNIAPQKAVIAETGEVVDADEVKINTVLEVKAGEVIPIDGVVIDGICEVDEKKLTGESFPVAKQKDSTVWAGTINLNGYISVKTTALAEDCVMAKMAKLVEEAQNSKTNIQRLIDKFAQFYTPGVVIISALVAVIPLALKQHNHKLWLQFSLVVLVSACPCALILSTPVATFCAYTKAATSGLLIKGGDHLETLAKIKVMAFDKTGTITKGEFVVTHFQSLSDDIDFNTLAYWVSSIESKSSHPSAAAIVDYGRSLSVEPEPEKVTEFEIFPGEGICGKIEGRVIYIGNKRIAARAGSETVPILQGEVERGKTTGYIYLGAIPIGFFSLSDACRLRVQEAIGQLKSLGIKTAMLTGDNQSAAMQVQDELGHSLELVHAELLPEDKVKIISEFKKEGPTAMVGDGLNDAPALAAADIGISMGISGSALASETGNIILMSNDIMKIPEAIKLARKASRKVVENIVFSIMTKAAILDLAIGGHPLVWAAVVADVGTCLLVIFNSMLLLRKGHNHGGKCCRSSTKPHNHKNGCGGSHDNSSHHHHHHEHDQHQHEDHSHKRCCSEKTKKLFPPQKCGGAHGSSSHHHHHHRQHQHEYHNHDQHDQHHQKCASQTSFSTCPPCS* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0506 809 MobiDBLite consensus disorder prediction 704 809 - -
Gso17g0506 809 ProSitePatterns E1-E2 ATPases phosphorylation site. 393 399 IPR018303 -
Gso17g0506 809 CDD P-type_ATPase_HM 115 693 - -
Gso17g0506 809 SUPERFAMILY HMA, heavy metal-associated domain 7 75 IPR036163 GO:0046872
Gso17g0506 809 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 142 696 - -
Gso17g0506 809 MobiDBLite consensus disorder prediction 722 754 - -
Gso17g0506 809 SFLD p-type atpase 374 643 IPR044492 -
Gso17g0506 809 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 3 773 - -
Gso17g0506 809 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 165 667 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso17g0506 809 MobiDBLite consensus disorder prediction 795 809 - -
Gso17g0506 809 PRINTS P-type cation-transporting ATPase superfamily signature 240 254 - -
Gso17g0506 809 PRINTS P-type cation-transporting ATPase superfamily signature 391 405 - -
Gso17g0506 809 PRINTS P-type cation-transporting ATPase superfamily signature 537 547 - -
Gso17g0506 809 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
Gso17g0506 809 PRINTS P-type cation-transporting ATPase superfamily signature 615 627 - -
Gso17g0506 809 SFLD C1.7: P-type atpase like 374 643 - -
Gso17g0506 809 SUPERFAMILY Calcium ATPase, transmembrane domain M 142 481 IPR023298 -
Gso17g0506 809 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 3 773 - -
Gso17g0506 809 Coils Coil 286 306 - -
Gso17g0506 809 Gene3D - 402 523 IPR023299 GO:0000166
Gso17g0506 809 Pfam haloacid dehalogenase-like hydrolase 387 605 - -
Gso17g0506 809 SUPERFAMILY Calcium ATPase, transduction domain A 205 290 IPR008250 -
Gso17g0506 809 Pfam E1-E2 ATPase 201 369 - -
Gso17g0506 809 Gene3D - 180 294 - -
Gso17g0506 809 MobiDBLite consensus disorder prediction 767 782 - -
Gso17g0506 809 Gene3D - 382 642 IPR023214 -
Gso17g0506 809 PRINTS Copper-transporting ATPase signature 182 200 - -
Gso17g0506 809 PRINTS Copper-transporting ATPase signature 313 327 - -
Gso17g0506 809 PRINTS Copper-transporting ATPase signature 569 586 - -
Gso17g0506 809 PRINTS Copper-transporting ATPase signature 626 640 - -
Gso17g0506 809 SUPERFAMILY HAD-like 390 692 IPR036412 -
Gso17g0506 809 Gene3D - 5 78 - -
Gso17g0506 809 ProSiteProfiles Heavy-metal-associated domain profile. 10 76 IPR006121 GO:0046872
Gso17g0506 809 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 142 694 IPR027256 GO:0006812|GO:0016021|GO:0019829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0506 Gso-Chr17 4608776 4623864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0506 4 785 Primary Pumps ATPases AT4G30110 61.044 0.0 1007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0506 K01534 - gmx:100817567 1360.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0506 17 4608776 4623864 Gso17g0506 17 4608776 4623864 ECH
Gso13g0716 13 21415943 21426228 Gso17g0506 17 4608776 4623864 GST