Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0497 ATGCGGGATAGTGAGAAGAAGTTAAACAAAAAAGGATCTAAAAAATCCAGTCCTTTGAAGGTGCGTAAGAAGGGCCAAGGGAAGAAGGAAAAAGTGAAAGTGGGATCAAAATCTCACACAAAAAATGCTGGCACTGATATATCAAGGAAGAGAGTTATCTCTTCTCTCAAGGTCAAAGGGCCACCTAAGGATTCTTCAGATAAGAAATTGATTATTGGAAAAAAATTGCCTATCAAGAACAAAAAATCTTCACAGAAGCCATCCTCAAAGTTACAAGGCAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGGGGGAGATGCTGATGGGGCGGTAAAGCTTCCCAAAATGAAGAGGAAGAGAAAGAAGAAAAGGCAAAGGAATAATGTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAACGAGGTATCTTTTAATTAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAAGCCAGAAAAGGAGCTTCAAAGAGCAAGGAAGCAGATTTTAAAATGTAGACTTGGTATTCGTGATGTCATTCGCCAGTTGGATTCTCTTGGTTCACTGAGTAGCATTGAAGATTCTGCCATTGCTCCAGATGGATCTGTTTACCATGAACATATATTCTGTGTAAAGTGCACTGTGCGTGAAGAGCTTCCAGATAATGATATTATACTATGCAATGGTACATGCAAGCGTGCTTTTCACCAAAAATGTCTAGATCCTCCTTTGGACACTGAAAATATTCCTCCTGGAGAGCAGGGCTGGTTTTGTAAATTTTGTGAATGTAAAATGGAAATACTGGAGGCAACGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTACTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATACCTGATGGTGAGACTGCATTACTGAATCCTGAAGAAGAATGGCCATCTGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACAATATCAACACAGAAGGAGCAAATGATAGTGCATCTGAGGATTTAACCAGTTCTACCAGTCTGTGTTCTTCTGATGGTGAATCTTCTCCAGTAGATGGTGTCAGTCATGAATATTTTTCTGTCAAAAGCAGCATAGATTCTGATGAGTCTGAGGACAAAGCCTGTGGCTGTAGGCAGCGAAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCCTGCATATGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTGATTCTCTTATGACTTTGCATGAAAGTGAGTATATGCACCCCAATAATGAGCACCTCGACATGACAAGAAAAAATTCTTCAAGCATAAAGATCAAAAGGCATTGTTTTAGGATTCCACATGATGCAGTTGAGAAGCTTCGCCAAGTGTTTGCTGAGAACGAACTTCCTCCAAGATCTATAAGAGAGGGTCTTTCAAAAGAGCTGGGACTTGACACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAAACAGAAAGTATCAAGCAGAAGGAGGAGCAGATCAGCTTCAGAGTATCACTTCTACAAAGAACTCCAGATTACAAAATCAGGAGATTTTCGATCTTCTGAAATCAAAGACCTCTAAAATTACTACGACACATTTCCAGAAGGATGTTAAAAATGTCAATGGAAGAAAGAAAACAAAGTCATCTAACAAGAAAAGACAACCAGAAATTCCTCCACCTCCAGGAGAAAATGGCAACATGGACTTTATGGAGATCAGTGATGATGTGAGCTTGAAGAAACTGTTAAAGAAAAGAAAGAAGAGGTTGATAAGTTTTACATTTGAAGGAGACTCTCAGGCGGCAGAGTTGGAATTTGAAAGGCTAAGCAAATTGAAGACTAAAGTAGATAGTATGAAGCAAAAATTAACTGCAATTCAAAATTCCAGAGTTAAGGATTCAAATGAACCCCATTCTAGTGAACCATCCATTGTATATGTACCCACAGCAGTGTTACGGGAAAAGGTTGAATGA 2112 0.3977 MRDSEKKLNKKGSKKSSPLKVRKKGQGKKEKVKVGSKSHTKNAGTDISRKRVISSLKVKGPPKDSSDKKLIIGKKLPIKNKKSSQKPSSKLQGKKASLSSRKEGGDADGAVKLPKMKRKRKKKRQRNNVDLDDPSRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIKPEKELQRARKQILKCRLGIRDVIRQLDSLGSLSSIEDSAIAPDGSVYHEHIFCVKCTVREELPDNDIILCNGTCKRAFHQKCLDPPLDTENIPPGEQGWFCKFCECKMEILEATNAHLGTHFSLHSTWQDVFKEEAAIPDGETALLNPEEEWPSDDSEDDDYDPERKEDSHNINTEGANDSASEDLTSSTSLCSSDGESSPVDGVSHEYFSVKSSIDSDESEDKACGCRQRKAVDYKKLYDEMFGKDAPAYEQLSEDEDWGPGKRKRREKESDAVDSLMTLHESEYMHPNNEHLDMTRKNSSSIKIKRHCFRIPHDAVEKLRQVFAENELPPRSIREGLSKELGLDTEKVSKWFKNARYLALKNRKYQAEGGADQLQSITSTKNSRLQNQEIFDLLKSKTSKITTTHFQKDVKNVNGRKKTKSSNKKRQPEIPPPPGENGNMDFMEISDDVSLKKLLKKRKKRLISFTFEGDSQAAELEFERLSKLKTKVDSMKQKLTAIQNSRVKDSNEPHSSEPSIVYVPTAVLREKVE* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0497 703 ProSitePatterns Zinc finger PHD-type signature. 225 276 IPR019786 -
Gso17g0497 703 PANTHER POLYCOMB PROTEIN PCL 1 679 - -
Gso17g0497 703 SMART HOX_1 478 540 IPR001356 GO:0003677
Gso17g0497 703 MobiDBLite consensus disorder prediction 1 134 - -
Gso17g0497 703 SMART PHD_3 224 277 IPR001965 -
Gso17g0497 703 MobiDBLite consensus disorder prediction 13 30 - -
Gso17g0497 703 SUPERFAMILY FYVE/PHD zinc finger 216 282 IPR011011 -
Gso17g0497 703 Pfam Homeodomain 487 531 IPR001356 GO:0003677
Gso17g0497 703 ProSiteProfiles Zinc finger PHD-type profile. 222 279 IPR019787 -
Gso17g0497 703 MobiDBLite consensus disorder prediction 96 113 - -
Gso17g0497 703 MobiDBLite consensus disorder prediction 420 446 - -
Gso17g0497 703 Pfam PHD-finger 224 279 IPR019787 -
Gso17g0497 703 Gene3D - 424 530 - -
Gso17g0497 703 SUPERFAMILY Homeodomain-like 472 535 IPR009057 -
Gso17g0497 703 Coils Coil 655 675 - -
Gso17g0497 703 MobiDBLite consensus disorder prediction 347 373 - -
Gso17g0497 703 CDD homeodomain 477 531 IPR001356 GO:0003677
Gso17g0497 703 MobiDBLite consensus disorder prediction 581 614 - -
Gso17g0497 703 MobiDBLite consensus disorder prediction 316 377 - -
Gso17g0497 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 273 IPR013083 -
Gso17g0497 703 MobiDBLite consensus disorder prediction 321 335 - -
Gso17g0497 703 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 679 - -
Gso17g0497 703 CDD PHD_PRHA_like 224 276 IPR045876 -
Gso17g0497 703 ProSiteProfiles 'Homeobox' domain profile. 476 536 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0497 Gso-Chr17 4513312 4519159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0497 127 541 Homeobox Transcription Factor Family AT4G29940 57.176 4.15e-156 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Gso17g0497 Homeodomain 8.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0497 - - gmx:100817639 1260.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0497 17 4513312 4519159 Gso17g0497 17 4513312 4519159 ECH
Gso13g0724 13 21512507 21518191 Gso17g0497 17 4513312 4519159 GST
Gso17g0497 17 4513312 4519159 Gso15g1366 15 14492018 14505883 PCT
Gso17g0497 17 4513312 4519159 Gso9g0506 9 5446047 5453096 PCT
Gso15g1366 15 14492018 14505883 Gso17g0497 17 4513312 4519159 PCT
Gso9g0506 9 5446047 5453096 Gso17g0497 17 4513312 4519159 PCT