Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0492 ATGACAGACGAACAGCAACATCAATTCCCATCATCGATGGTCTTCTCTCCCCTATATATACATATATACCCCGCAGAAGTGGAAAATAAAAGTGAAGAAAACAGACCAAAAATAGAAAGAAAGAGAAATACCAAAACCTTGGCGCATCATATTCTTTATTCCCTCACTTGGATCGTTAATTCCGCGAACGAGCTTCTGCCCTTCAAATTAACCATGGAGAATATTGGTGAGGAGTACGGCTACTGGCCGGAGAACGACATGCTTTTCCAAAACGAAGACCTTGGCAGCTGGGCGATAATGGATGAGGCAGCGTTATCAGGGTCAGGGTACTATGATTCAAGCTCCCCGGACGGTACTGGTGCTTCTTCATCGGTGGCATCTAAGAACATTGTCTCCGAGAGGAATAGAAGGAAGAAGCTCAACGATAGGCTTTTTGCTCTAAGAGCAGTGGTCCCCAACATTACCAAGATGGATAAGGCTTCTATCATTAAGGATGCTATTGAGTACATCCAGCACTTGCATGACCAAGAGAAGAGAATCCAAGCTGAGATTTTGGATCTTGAATCTGGGAATAAACTCAAAAACCCAACCTATGAATTTGACCAGGACCTCCCTATTCTGCTCAGGTCCAAGAAGAAGAGAACAGAACAGCTATTCGATTCTGTCAGTTCAAGAAATTCTCCAATTGAAATAATTGACCTGAGGGTAACATACATGGGAGAGAAGACGTTTGTGGTGAGCTTGACATGTAGCAAAAGGACAGACACAATGGTAAAACTGTGTGCGGTGTTCGAATCTTTAAAGCTGAAAGTCATTACGGCCAATATCACTTCTTTTTCAGGCACGCTTCTGAAGACAGTCTTCATCCAGGCAGATGAAGAAGAGAGAGACTTTTTGCATATAAAAATTCAGACAGCGATTTCAGCTCTCAATGATCCTCTAAGCCCAATGAGTATCTGA 960 0.4292 MTDEQQHQFPSSMVFSPLYIHIYPAEVENKSEENRPKIERKRNTKTLAHHILYSLTWIVNSANELLPFKLTMENIGEEYGYWPENDMLFQNEDLGSWAIMDEAALSGSGYYDSSSPDGTGASSSVASKNIVSERNRRKKLNDRLFALRAVVPNITKMDKASIIKDAIEYIQHLHDQEKRIQAEILDLESGNKLKNPTYEFDQDLPILLRSKKKRTEQLFDSVSSRNSPIEIIDLRVTYMGEKTFVVSLTCSKRTDTMVKLCAVFESLKLKVITANITSFSGTLLKTVFIQADEEERDFLHIKIQTAISALNDPLSPMSI* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0492 319 SMART finulus 130 179 IPR011598 GO:0046983
Gso17g0492 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 173 IPR011598 GO:0046983
Gso17g0492 319 Gene3D - 122 191 IPR036638 GO:0046983
Gso17g0492 319 Pfam Helix-loop-helix DNA-binding domain 131 174 IPR011598 GO:0046983
Gso17g0492 319 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 72 313 - -
Gso17g0492 319 PANTHER TRANSCRIPTION FACTOR BHLH35 72 313 - -
Gso17g0492 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 188 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0492 Gso-Chr17 4470874 4477713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0492 72 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 59.375 1.24e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g0492 HLH 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0492 - - gmx:100803916 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0492 17 4470874 4477713 Gso17g0492 17 4470874 4477713 ECH
Gso13g0730 13 21554306 21561362 Gso17g0492 17 4470874 4477713 GST
Gso17g0492 17 4470874 4477713 Gso15g1371 15 14587833 14596379 PCT
Gso17g0492 17 4470874 4477713 Gso9g0509 9 5504544 5513305 PCT
Gso15g1371 15 14587833 14596379 Gso17g0492 17 4470874 4477713 PCT
Gso9g0509 9 5504544 5513305 Gso17g0492 17 4470874 4477713 PCT