Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0485 ATGTTTTGGAGTGTGAAATTCCAAAGTAGGAAGACTGAACTTAGTTTTCTTTTGCGATCGGGTGAGGTTTGTTCTGAGAGAGTTTTTGGAAGTATGAGTTTCTCCAAGGGTTCTCCTGGCAGCCAGACGCCGCGTGATTTAGAAGCTGGGTCTCCTGCTAGCTTCTCTGCTGATTTTGATGATGGAGACGTTTCTGCTGATCCATTTGACGTTACCAGAACAAAGAATGCTCCGGTTCAACGCCTCAGGCGTTGGAGGCAAGCCGCACTTGTGCTCAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTAAAGAAAGAAGAAGAGAAGAAACGAGTATTAAGAATTGTTATAGTGCATACACGAGCCATTCAAGCCGCATATCGATTCAAGGAAGCTGGGCAAATGAATGGAATTGTAAAATCTCCTTCAAGCTCCACTGGAGAATTTTCGGTTGGACAAGAACAACTTTCTTCAATTTCAAGGGACCGTGATGCTACTGCTCTACAGGAAAATGGAGGGGTTGTAGGGTTATCACATTTGTTGAAAACCAATTTAGAGAAGGGGATTCAGAGTGATGATGCTGACTTGCTGAAACGGAGGAGTGCATTCGGCTCCAACAACTACCCACGAAAGAGTGGAAGAAGTTTTTTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCTGCAATGGCTTCATTAGCACTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGACGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTCTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGACCTAAATGAGCACAAAAGAAACATACATTTGGAGGTTATTCGAGATGGTAGAAGAGTCGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATACCCCTTAACATTGGTAATCAGGTCCCTGCTGATGGAGTTTTGATCACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTCGAAAAAAATTCTAGTGATCCTTTTCTGATTTCTGGATGTAAAGTTGCAGATGGCAGTGGAACTATGCTGGTAACAGCTGTTGGTATTAATACTGAATGGGGGCTTCTAATGGCCAGCATTTCAGAAGACAATGGTGAAGAAACTCCTTTGCAGGTACGCTTAAATGGTCTTGCTACCTTAATTGGTATCGTTGGACTCTCTGTGGCTGTCGTTGTTCTGATGGTGCTACTGGCCAGATATTTCTCTGGGCACACTAGAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAGACCAAAGTTGGTGATGCTATTGATGGAGTAATTAAGATATTCACTATCGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGCTGCCTTTAGCAGTTACCTTAACACTTGCCTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGGATTGGTGGTGGGAAGAAGATTGCTGATCCTCATGATGTATCACAGTTCTCTCGTATGCTCTGCTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTATATATCCCTGAGGGTGGTAATGATGTTGAGATTTCTGGATCACCAACAGAAAAGGCAATATTAGAGTGGGGAGTTAAGCTTGGGATGAATTTTGACACTGCCAGATCAAAGTCATCAATTATTCATGTATTCCCATTCAATTCAGACAAAAAGCGAGGAGGAGTTGCAACATGGGTGTCTGACTCTGAAGTCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCTTGCTGTACACGGTATTTTGATGCTAATGATCAGTTGGTGGAGATGGATGAAGCAAAGATGTCAACTTTTAAAAAAGCTATTGAAGATATGGCTGCTGATAGTCTACGTTGTGTTGCGATTGCCTATAGATCATATGAAATGAAGAATGTTCCAACTAGTGAGGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTTGTTTTATTGGCTATTATTGGCCTAAAGGATCCTTGTCGACCTGGTGTCAAAGATGCAGTGCAGCTTTGCCAAAAGGCTGGGGTTGAGGTAAAAATGGTCACTGGTGACAACGTTAAAACTGCAAGAGCAATTGCTGTGGAATGTGGAATACTTGGTTCAATTTCTGATGCTACAGAACCAATCATCATTGAAGGAAAAAGATTTCGTGCCTTGACAGATGAAGGGAGAGCAGATATTGTTGAAAAGATATTGGTTATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGAGATGGAACAAACGATGCTCCCGCACTACATGAGGCCGATATTGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCACTTGCTATAAATGTTGTTGCTGCATTTACCACCGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCATTAGCCTTGGCAACTGAACCACCAACTGATTCCCTGATGGATCAAAGTCCAAAGGGTCGAAGAGAACCTCTTGTATCAAATATTATGTGGAGGAATCTGCTGATACAGGCTATGTACCAAGTGTCCGTCTTGCTTATACTTAATTTCCGAGGTGTGAGCTTACTGGCTTTGAGGGATGAGCCCAACCGCCCTGCAATCAAAGTGAAGAACTCTCTGATATTTAATGCATTTGTTCTTTGTCAAGTCTTTAATGAATTTAATGCCCGAAAGCCTGATAAATTCAACATATTCAAGGGAGTCACAAGAAACTACCTCTTCATGGGGATAGTAGGAATAACTGTTGTGCTTCAGATTGTCATCATTGAATATCTCGGGAAGTTCACTAAAACAGCCAAGCTTAATTGGAAGCAGTGGCTCATTTCTGTTATTATAGCATTTATCAGCTGGCCTCTTGCTGTGGTAGGAAAATTGATACCAGTACCAGAGGCAGAACTCAGTAACTTTTTCCGAAAATGTCTTCGTAGACAAAATTAA 3318 0.4207 MFWSVKFQSRKTELSFLLRSGEVCSERVFGSMSFSKGSPGSQTPRDLEAGSPASFSADFDDGDVSADPFDVTRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKKEEEKKRVLRIVIVHTRAIQAAYRFKEAGQMNGIVKSPSSSTGEFSVGQEQLSSISRDRDATALQENGGVVGLSHLLKTNLEKGIQSDDADLLKRRSAFGSNNYPRKSGRSFLMFMWDACKDLTLIILMVAAMASLALGIKSEGIKEGWYDGGSIAFAVILVILVTAISDYKQSLQFQDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGVLITGHSLAIDESSMTGESKIVEKNSSDPFLISGCKVADGSGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGLATLIGIVGLSVAVVVLMVLLARYFSGHTRNPDGSVQFIAGKTKVGDAIDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAWIGGGKKIADPHDVSQFSRMLCSLLIEGVAQNTNGSVYIPEGGNDVEISGSPTEKAILEWGVKLGMNFDTARSKSSIIHVFPFNSDKKRGGVATWVSDSEVHIHWKGAAEIVLACCTRYFDANDQLVEMDEAKMSTFKKAIEDMAADSLRCVAIAYRSYEMKNVPTSEEELAHWSLPEDDLVLLAIIGLKDPCRPGVKDAVQLCQKAGVEVKMVTGDNVKTARAIAVECGILGSISDATEPIIIEGKRFRALTDEGRADIVEKILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINVVAAFTTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMDQSPKGRREPLVSNIMWRNLLIQAMYQVSVLLILNFRGVSLLALRDEPNRPAIKVKNSLIFNAFVLCQVFNEFNARKPDKFNIFKGVTRNYLFMGIVGITVVLQIVIIEYLGKFTKTAKLNWKQWLISVIIAFISWPLAVVGKLIPVPEAELSNFFRKCLRRQN* 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0485 1105 Pfam Cation transporter/ATPase, N-terminus 173 239 IPR004014 -
Gso17g0485 1105 Pfam E1-E2 ATPase 293 493 - -
Gso17g0485 1105 PRINTS Sodium/potassium-transporting ATPase signature 258 278 - -
Gso17g0485 1105 PRINTS Sodium/potassium-transporting ATPase signature 508 529 - -
Gso17g0485 1105 PRINTS Sodium/potassium-transporting ATPase signature 635 653 - -
Gso17g0485 1105 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 522 721 IPR023299 GO:0000166
Gso17g0485 1105 Gene3D - 525 724 IPR023299 GO:0000166
Gso17g0485 1105 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 150 1088 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gso17g0485 1105 SFLD Haloacid Dehalogenase 497 876 - -
Gso17g0485 1105 SUPERFAMILY Calcium ATPase, transduction domain A 293 388 IPR008250 -
Gso17g0485 1105 SUPERFAMILY Calcium ATPase, transmembrane domain M 174 1087 IPR023298 -
Gso17g0485 1105 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 260 430 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso17g0485 1105 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 792 904 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso17g0485 1105 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 455 558 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso17g0485 1105 PRINTS P-type cation-transporting ATPase superfamily signature 339 353 - -
Gso17g0485 1105 PRINTS P-type cation-transporting ATPase superfamily signature 515 529 - -
Gso17g0485 1105 PRINTS P-type cation-transporting ATPase superfamily signature 717 728 - -
Gso17g0485 1105 PRINTS P-type cation-transporting ATPase superfamily signature 739 749 - -
Gso17g0485 1105 PRINTS P-type cation-transporting ATPase superfamily signature 824 843 - -
Gso17g0485 1105 PRINTS P-type cation-transporting ATPase superfamily signature 848 860 - -
Gso17g0485 1105 Gene3D - 78 133 - -
Gso17g0485 1105 SFLD p-type atpase 497 876 IPR044492 -
Gso17g0485 1105 Gene3D - 512 869 IPR023214 -
Gso17g0485 1105 SMART Cation_ATPase_N_a_2 174 245 IPR004014 -
Gso17g0485 1105 MobiDBLite consensus disorder prediction 33 49 - -
Gso17g0485 1105 MobiDBLite consensus disorder prediction 33 52 - -
Gso17g0485 1105 PANTHER CALCIUM-TRANSPORTING ATPASE 63 1100 - -
Gso17g0485 1105 SUPERFAMILY HAD-like 513 929 IPR036412 -
Gso17g0485 1105 Pfam Ca2+-ATPase N terminal autoinhibitory domain 66 109 IPR024750 GO:0005516
Gso17g0485 1105 Pfam haloacid dehalogenase-like hydrolase 512 838 - -
Gso17g0485 1105 PANTHER CATION TRANSPORTING ATPASE 63 1100 - -
Gso17g0485 1105 Gene3D - 196 391 - -
Gso17g0485 1105 Gene3D - 223 1078 - -
Gso17g0485 1105 Pfam Cation transporting ATPase, C-terminus 909 1086 IPR006068 -
Gso17g0485 1105 ProSitePatterns E1-E2 ATPases phosphorylation site. 517 523 IPR018303 -
Gso17g0485 1105 CDD P-type_ATPase_Ca_PMCA-like 197 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0485 Gso-Chr17 4376584 4401926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0485 45 1105 Primary Pumps ATPases AT4G29900 70.677 0.0 1529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0485 K01537 - gmx:100790157 2102.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0485 17 4376584 4401926 Gso17g0485 17 4376584 4401926 ECH
Gso13g0735 13 21623549 21649377 Gso17g0485 17 4376584 4401926 GST
Gso17g0485 17 4376584 4401926 Gso15g1376 15 14830364 14861292 PCT
Gso17g0485 17 4376584 4401926 Gso9g0517 9 5701917 5723153 PCT
Gso15g1376 15 14830364 14861292 Gso17g0485 17 4376584 4401926 PCT
Gso9g0517 9 5701917 5723153 Gso17g0485 17 4376584 4401926 PCT