Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0479 ATGGCAGTAGATCTGGCAAATATTAGGATGGAAGAGAATATGGCGATTCAAGAAGCAGCTTCCGCTGGGTTGAAGAGTATGGAGCATCTGATTCGCGTCCTTTCTTCTCAAATCCCTTCTGCTTCGTCTTCTTCTTCTAACGCACACCACCACCGTCTTAATCTCAACCACCTTGACTGCGCGGAAATCACCGACTTCACTGTCTCCAAGTTCAAACAAGTCATCAACTTGTTGAATCGCACCGGCCACGCTCGCTTTCGTCGCGCACCTTCTCATCCTTCTCCTTCAATTTCTCCCTCTCAAACTCAACTTCAGCCACAACCACAACCACCACAGACGCTGACTCTTGATTTTGCAAAACCTGTTATGGTAAAGTCAAATCCCAACCCTAACCCTTCTTCTACCGATTTGTCGGTTTCTCAATATTCTAAGACCAAGGACACAACCACCTTTAGTATATCCCCTCCCATGTCCACCACCACTTCTTCCTTCCTGTCATCCATCACCGCCGACGGCAGCGTCTCTGACGGCAAGATCGGCCCCGCCATCCTCGCCGCCGGCAAGCCTCCTCTCTCCTCATCCCACCGGAAAAGGTGTCACGACGCCACTCTCTCCGCCGGAAAAGCCTCTTCCTCCGCTCACTGCCATTGCTCCAAGAGAAGGAAATCTCGTGTGAAACGAATGATACGTGTGCCGGCGATAAGTTCGAAGATTGCCGATATCCCAGCGGACGAGTACTCGTGGAGAAAGTATGGTCAAAAACCAATCAAGGGATCACCTTACCCACGAGGGTATTATAAGTGCAGTAGCGTGAGAGGGTGTCCGGCGAGGAAGCACGTGGAGCGAGCCCAGGATGACCCCAACATGCTCATCGTTACCTACGAGGGAGAGCACCGTCATCCGCAACCGCGTCTGCCGGAAACTTCTGCCGGCGCCGCCGCGGATTTTGTCTCTCAGCCTGTTTAA 966 0.5228 MAVDLANIRMEENMAIQEAASAGLKSMEHLIRVLSSQIPSASSSSSNAHHHRLNLNHLDCAEITDFTVSKFKQVINLLNRTGHARFRRAPSHPSPSISPSQTQLQPQPQPPQTLTLDFAKPVMVKSNPNPNPSSTDLSVSQYSKTKDTTTFSISPPMSTTTSSFLSSITADGSVSDGKIGPAILAAGKPPLSSSHRKRCHDATLSAGKASSSAHCHCSKRRKSRVKRMIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAQDDPNMLIVTYEGEHRHPQPRLPETSAGAAADFVSQPV* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0479 321 MobiDBLite consensus disorder prediction 296 321 - -
Gso17g0479 321 MobiDBLite consensus disorder prediction 126 141 - -
Gso17g0479 321 Gene3D WRKY domain 228 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso17g0479 321 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 7 311 - -
Gso17g0479 321 SMART WRKY_cls 242 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso17g0479 321 ProSiteProfiles WRKY domain profile. 237 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso17g0479 321 SUPERFAMILY WRKY DNA-binding domain 240 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso17g0479 321 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 311 IPR044810 GO:0003700
Gso17g0479 321 MobiDBLite consensus disorder prediction 86 114 - -
Gso17g0479 321 MobiDBLite consensus disorder prediction 122 141 - -
Gso17g0479 321 Pfam Plant zinc cluster domain 196 240 IPR018872 -
Gso17g0479 321 Pfam WRKY DNA -binding domain 244 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso17g0479 321 MobiDBLite consensus disorder prediction 93 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0479 Gso-Chr17 4331943 4333609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0479 1 307 WRKY Transcription Factor Family AT2G24570 49.852 3.38e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso17g0479 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0479 - - gmx:732589 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0479 17 4331943 4333609 Gso17g0479 17 4331943 4333609 ECH
Gso13g0738 13 21668752 21670390 Gso17g0479 17 4331943 4333609 GST
Gso1g1625 1 52933084 52935024 Gso17g0479 17 4331943 4333609 PCT
Gso11g0456 11 4031654 4033329 Gso17g0479 17 4331943 4333609 PCT
Gso17g0479 17 4331943 4333609 Gso15g1381 15 14954611 14956607 PCT
Gso17g0479 17 4331943 4333609 Gso9g0524 9 5795549 5797698 PCT
Gso15g1381 15 14954611 14956607 Gso17g0479 17 4331943 4333609 PCT
Gso9g0524 9 5795549 5797698 Gso17g0479 17 4331943 4333609 PCT