Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0478 ATGGGGAATTGTTGGAGTCTTCAATCAGGTTCTCCAGGCGATCATCCCAACTCCAATACTGCCCCCAACCTCAACAATCAATCAGGGAATATTCAATTTTCTGCTGGTCTAAGCAACACAAGATTAACACAGAATGGCAATTCTACTTCTCTTGGGCGTAGCAGCCACTCTGGAGGAATCAGCAGCAGGTTCTTTGGGCCAAGTAGTAGTAATAACTACTCAACTGGAAATAACACTAGCACATCCCTTTGGGGAGGCTCTGAGACTAGCCAAGCCTCTCGAGTTAGAGATGAAGAGGAGTTTCCTCAAGGGCAGATCTTGGATAATGTTGACTTGAGAGCATTTACTTTGGCAGAACTGAAGGTAGCCACCAAAAATTTCAGAGCTGAGACTGTGATAGGAGAGGGGGGGTTTGGTAAAGTATACAAGGGCTTGATTGATGATAGAGCAGCAAAAAAAAGAGGTGAGGGGTTGACTGTTGCCATCAAGAAATTGAATTCTGAAAGCAACCAAGGAATTGTGGAATGGCAGTCAGAGGTGAATTTCTTAGGGAGGCTTTCTCACCCCAACCTTGTTAAGTTGTTGGGATTTGGGCTAGAGGATACTGAACTGTTCCTGGTGTATGAATTTATGCATCGTGGCAGCTTGGATAACCACCTATATGGAAGAGGTGCAAATGTTCGGTCACTTTCTTGGGATACAAGGCTAAAGACTATGATTGGAACAGCTAGGGGACTGAATTTCCTTCACTCCTTGGAGAAGAAAATTATATATAGAGATGTCAAACCCTCAAATATACTACTTGACAAGCATTATACAGTCAAGTTATCAGACTTTGGCTTAGCTAAATCTGTGAATTCGCCTGATCATAGTCACATAACAACACGGATTATGGGGACATATGGCTACGCTGCTCCTGAGTACGTTGCAACAGGTCATTTGTACGTGAAAAGTGATGTGTATGGATTTGGAATTGTTTTGGTGGAGGTGCTGACGGGCAAGAGGATAAGGGATATATTGGACCAGTGTCAGAAAATGTCCTTGAGAGATTGGCTCAAAACAAATCTATTAAGTAGAGCAAAAATAAGAAGCACCATGGATGCAAAGTTAGAAGGAAGGTATCCAAACAATTTAGCTTTACAATTAGCTGAACTAGCTCTCAAATGCATCCAAACAGATCCCAAAGTCAGGCCATCAATGAATGAAGTTGTTGAAACATTGGAACAGATTGAAGCAGCCAATGAGAAACCAGCTGATAACAGAAGACGGGTTACTCGTACCCGGGTAGTTCAACAACATGGAGGGCCTGATGGTGGTTAA 1320 0.4288 MGNCWSLQSGSPGDHPNSNTAPNLNNQSGNIQFSAGLSNTRLTQNGNSTSLGRSSHSGGISSRFFGPSSSNNYSTGNNTSTSLWGGSETSQASRVRDEEEFPQGQILDNVDLRAFTLAELKVATKNFRAETVIGEGGFGKVYKGLIDDRAAKKRGEGLTVAIKKLNSESNQGIVEWQSEVNFLGRLSHPNLVKLLGFGLEDTELFLVYEFMHRGSLDNHLYGRGANVRSLSWDTRLKTMIGTARGLNFLHSLEKKIIYRDVKPSNILLDKHYTVKLSDFGLAKSVNSPDHSHITTRIMGTYGYAAPEYVATGHLYVKSDVYGFGIVLVEVLTGKRIRDILDQCQKMSLRDWLKTNLLSRAKIRSTMDAKLEGRYPNNLALQLAELALKCIQTDPKVRPSMNEVVETLEQIEAANEKPADNRRRVTRTRVVQQHGGPDGG* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0478 439 Pfam Protein kinase domain 129 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0478 439 MobiDBLite consensus disorder prediction 1 100 - -
Gso17g0478 439 SUPERFAMILY Protein kinase-like (PK-like) 108 407 IPR011009 -
Gso17g0478 439 ProSiteProfiles Protein kinase domain profile. 127 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0478 439 Gene3D Phosphorylase Kinase; domain 1 87 210 - -
Gso17g0478 439 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 12 439 - -
Gso17g0478 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Gso17g0478 439 SMART serkin_6 127 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0478 439 PANTHER OS01G0588500 PROTEIN-RELATED 12 439 - -
Gso17g0478 439 ProSitePatterns Protein kinases ATP-binding region signature. 133 164 IPR017441 GO:0005524
Gso17g0478 439 MobiDBLite consensus disorder prediction 1 91 - -
Gso17g0478 439 MobiDBLite consensus disorder prediction 414 439 - -
Gso17g0478 439 Gene3D Transferase(Phosphotransferase) domain 1 211 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0478 Gso-Chr17 4311779 4314473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0478 105 407 Glycoside Hydrolase AT3G07070 42.434 6.06e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso17g0478 Pkinase 2.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0478 - - gmx:100816903 831.632