Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0473 ATGGAAGACAATAATGAAGAATGCATCGCGGGGCTATGTTTGGGACTGGGACTGGGATTGGGATCAGGACATGTTCCAAAGAAGAATAAGCAGAAAGAGAACCAGGCTGTGGTGTGCCTAGACCTAGCGTTTGAGCTTTGTCCAAAAGGAGAAAAAGCCGTTAATAACGTGAATCATCATCATGATAAGGTAGAGAGAATCAGCTTGGAGAGAATCCACGACTACCCCAATGAAAAGAGCACTGATTCTGATAACAGCAACAACAACGGATGCAGAAAGAAACTGAGGCTTTCCAAGGATCAATCATCCATGCTTGAGAACAGCTTCAAACAGCATAGCACTCTTAATCCGGTCCAGAAACAAGCACTTGCTGATCAATTGAATTTAAAAACTAGACAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAACTGAAGCAGACAGAAGTGAACCGCGAGTTGCTGAAAAAACACTGTCAAAATCTAAGCGATGAGAACAAAAGATTGAAGAAGGAATTGCAGGAACTACGTGCAGTTAAGGTTGGACCGTCGCCACCATGCATTCAACTATCCAAAACGGCGACCCTGACTATGTGTTCTTTGTGCGAGAAACTAGTAAATTAA 630 0.4286 MEDNNEECIAGLCLGLGLGLGSGHVPKKNKQKENQAVVCLDLAFELCPKGEKAVNNVNHHHDKVERISLERIHDYPNEKSTDSDNSNNNGCRKKLRLSKDQSSMLENSFKQHSTLNPVQKQALADQLNLKTRQVEVWFQNRRARTKLKQTEVNRELLKKHCQNLSDENKRLKKELQELRAVKVGPSPPCIQLSKTATLTMCSLCEKLVN* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0473 209 SMART HOX_1 90 152 IPR001356 GO:0003677
Gso17g0473 209 Pfam Homeodomain 92 146 IPR001356 GO:0003677
Gso17g0473 209 Coils Coil 140 181 - -
Gso17g0473 209 MobiDBLite consensus disorder prediction 73 93 - -
Gso17g0473 209 CDD homeodomain 92 149 IPR001356 GO:0003677
Gso17g0473 209 Gene3D - 96 146 - -
Gso17g0473 209 PANTHER - 11 206 - -
Gso17g0473 209 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Gso17g0473 209 SUPERFAMILY Homeodomain-like 79 149 IPR009057 -
Gso17g0473 209 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Gso17g0473 209 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 11 206 - -
Gso17g0473 209 SMART halz 148 192 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0473 Gso-Chr17 4277393 4279068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0473 83 205 Homeobox Transcription Factor Family AT4G16780 63.415 1.60e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso17g0473 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0473 K09338 - gmx:100813377 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0742 13 21724270 21725911 Gso17g0473 17 4277393 4279068 GST
Gso17g0473 17 4277393 4279068 Gso15g1385 15 15048981 15050797 PCT
Gso17g0473 17 4277393 4279068 Gso9g0527 9 5857298 5858919 PCT
Gso15g1385 15 15048981 15050797 Gso17g0473 17 4277393 4279068 PCT
Gso9g0527 9 5857298 5858919 Gso17g0473 17 4277393 4279068 PCT