Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0465 ATGATTCCAGCCTATCGCCACTCAGTATCTTCTGTTATGCCTCTGGATCTTAATGAAGATCAAAACCACGAGTTCTTCAGTCCAACTCACCACCCTTCCTCTTCGTTTTCTTCTCTATCTTCATATCCTATTCTCTTCAACCCGCCAAATCAAGATCAAGAAGCTCGATCATACTACTGGGAACCAACAAAGCAGTACTTACCAAGTCATGAAGAAGAGACTGAGAAGATTATTCCTTCTAGCGGATCATGGGATCACTCGGTGGCAGAAAGTGAGCACAATAAGGCGACAGTTTGGAAGAAAGCAGAAGAGAGGAATGAAAATCTTGAATCAGTTGCTGCTGAAGATGGTTCGTTGAAGTGGATGCCTGCCAAGATGAGAATTATGCGGAAGATGTTGGTGTCGGATCAAACTGATACATATACTAATTCAGACAACAACACTACGCACAAGTTTGATGATCAGAAACAACAACTGTCGTCACCGCTTGGAACTGATAACAGCAGCAGCAACAACTATTCAAACCACAGTAACAACACTGTTAGGGTTTGTTCTGATTGCCACACCACCAAGACTCCTCTATGGAGGAGTGGACCAAGAGGCCCCAAGTCACTTTGCAACGCCTGTGGGATTCGACAAAGGAAGGCAAGACGAGCCATGGCAGCTGCTGCGGCTTCTGCATCGGGAAATGGAACAGTAATTGTGGAAGCTAAGAAATCTGTGAAGGGACGGAACAAGTTGCAGAAGAAGAAAGAGAAGAAGACAAGAACTGAGGGTGCAGCACAGATGAAAAAGAAGCGGAAGCTTGGAGTTGGATCAGCAAAGGCATCTCAAAGTAGAAACAAGTTTGGTTTTGAGGATTTGACGTTGCGCTTGAGAAAGAACTTGGCTATGCATCAAGTTTTCCCTCAGGACGAGAAGGAGGCTGCGATCCTTCTCATGGCTTTATCTTATGGCCTTGTTCATTGA 969 0.4489 MIPAYRHSVSSVMPLDLNEDQNHEFFSPTHHPSSSFSSLSSYPILFNPPNQDQEARSYYWEPTKQYLPSHEEETEKIIPSSGSWDHSVAESEHNKATVWKKAEERNENLESVAAEDGSLKWMPAKMRIMRKMLVSDQTDTYTNSDNNTTHKFDDQKQQLSSPLGTDNSSSNNYSNHSNNTVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAASASGNGTVIVEAKKSVKGRNKLQKKKEKKTRTEGAAQMKKKRKLGVGSAKASQSRNKFGFEDLTLRLRKNLAMHQVFPQDEKEAAILLMALSYGLVH* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0465 322 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 176 218 - -
Gso17g0465 322 MobiDBLite consensus disorder prediction 242 276 - -
Gso17g0465 322 CDD ZnF_GATA 183 215 IPR000679 GO:0006355|GO:0043565
Gso17g0465 322 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 322 - -
Gso17g0465 322 ProSitePatterns GATA-type zinc finger domain. 184 209 IPR000679 GO:0006355|GO:0043565
Gso17g0465 322 Gene3D - 182 220 IPR013088 GO:0006355|GO:0008270
Gso17g0465 322 SMART GATA_3 178 229 IPR000679 GO:0006355|GO:0043565
Gso17g0465 322 MobiDBLite consensus disorder prediction 139 177 - -
Gso17g0465 322 Pfam GATA zinc finger 184 217 IPR000679 GO:0006355|GO:0043565
Gso17g0465 322 ProSiteProfiles GATA-type zinc finger domain profile. 178 214 IPR000679 GO:0006355|GO:0043565
Gso17g0465 322 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0465 Gso-Chr17 4203904 4206080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0465 118 322 C2C2-Gata Transcription Factor Family AT4G26150 43.119 1.14e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso17g0465 GATA 3.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0465 - - gmx:100810698 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0465 17 4203904 4206080 Gso17g0465 17 4203904 4206080 ECH
Gso13g0749 13 21795058 21797172 Gso17g0465 17 4203904 4206080 GST
Gso17g0465 17 4203904 4206080 Gso15g1391 15 15157199 15159298 PCT
Gso17g0465 17 4203904 4206080 Gso9g0531 9 5911273 5913635 PCT
Gso15g1391 15 15157199 15159298 Gso17g0465 17 4203904 4206080 PCT
Gso9g0531 9 5911273 5913635 Gso17g0465 17 4203904 4206080 PCT