Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0460 ATGGCCCCCAGAATCCTTCTATGCGGCGACGTTTTAGGGCGCCTCAACCAGCTCTTCAAGCGCGTCTCATCGGTGAACAAATCTGCAGGTCCATTCGACGCGCTCTTGTGCGTGGGTCAGTTCTTCCCTGACTCACCGGAGCAGCTCGAGGACTTCACGAAATACATCGAAGGTGGATCTCACTTTCCTCTTCCGACGTACTTCATCGGCGACTACGGCGTCGCCGCCCCCAAACTTCTCTTGCAAGCTTCCAAGGACTCCGCCAACCAAGGCTTCAAGATGGACGGCTTCAAGGTTTGCCACAACTTGTATTGGCTGAAAGGCAGTGGCAAATTCCCTCTCTTTGGGTTATCCGTGGCCTATTTATCTGGTAGGAAGTCATCCAGTGGTCAGCAGTTTGGAAATTACACTGAAGATGATGTTGATGCATTACGCGCAATTGCCGAGGAACCTGGAGTTGTTGATTTGTTCTTGACTAACGAATGGCCGAATGGGGTCACCAATAGAGCAGCTGATTCGGACATTCCTGCTGGACTCTCTGATGGCAGTGATTCAACTGTATCGGAATTAGTACAAGAGATCAAACCACGTTATCACATTGCAGGCACCAAAGGCATATACTATGCCCGCGAACCATATTCCAATGTTGATGCTGTGCATGTCACTCGTTTCATAGGGCTTGCGTCTGTTGGAAATAGAGATAAGCAGAAATTTATTCATGCAATCTCCCCCACACCCGCATCCACCATGTCTTCAACTGAGATTGCCATGAAAACCACAAATACCACCTTATCGCCATACACATTCAAGGAGAAAAGAACTTCTCCAATGGATTCAGCAAAGAGATCCAGTGATTCTATCTCTGATCCTCAATATTGGAGATATGATGTTGCTCAAAAGCGACAAAAACATGAAGCTGGACATGGTGATAAATTGTGTTTCAAATTTGTTTCTTCTGGCTCTTGTCCACGAGGAGAGAAGTGCAATTTTCAACATGATACAGATGCAAGGGAGCAGTGTATGAGAGGTGTTTGTTTTGATTTTTTGAATAAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCTTGCAGGATGAGGGCAACAGGCTTCCTTCTAGGAGGCCTGGATCTGGCAGGTCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCGAATGTAGAGTCACATTTAATCATAAGCATTGGGGAAAATTACTACTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCACGTACTGATAATACCAGTCGAGCATATGCCTAGTACCTTATCTATGCCTCCTGAATCTGAAATAGAGCTCTCTCGGTTTCAGAACAGTCTCAGGAGTTACTGCAAGAGCCAAGAGAAGGAATTCATCTTTTTTGAGTGGGTCTCTATACGTGGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCAATTATGGTTGAGAAAGTTTTCAATTTAGCTGCACAGAAGTTGGGATTTGAATTTGTGGCTAAGAAATTTGATAGCATTTCTGATGGAAGGAAGTTTTTGAAGACACAAATTGATGGGGATTCAAGTTTGTTCTATGCTCAAATCCCAGGAGGCACAATTCTGCTGCATCATGTTGAAGAGAAAGAGAAATTTCCTGCTCAATTTGGTCGTGAGGTTCTTGCTGGGTTGCTTAATATGGCAGATAATGCTGATTGGAGGAATCGCAAACATAGCAAAGATGAAGAAAAGGAAATTGTTGAAGATTTCAAGAGCCGATTTCAAGAATATGATCCAAACTGTTAG 1800 0.445 MAPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPEQLEDFTKYIEGGSHFPLPTYFIGDYGVAAPKLLLQASKDSANQGFKMDGFKVCHNLYWLKGSGKFPLFGLSVAYLSGRKSSSGQQFGNYTEDDVDALRAIAEEPGVVDLFLTNEWPNGVTNRAADSDIPAGLSDGSDSTVSELVQEIKPRYHIAGTKGIYYAREPYSNVDAVHVTRFIGLASVGNRDKQKFIHAISPTPASTMSSTEIAMKTTNTTLSPYTFKEKRTSPMDSAKRSSDSISDPQYWRYDVAQKRQKHEAGHGDKLCFKFVSSGSCPRGEKCNFQHDTDAREQCMRGVCFDFLNKGKCERGPDCNFKHSLQDEGNRLPSRRPGSGRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIIPVEHMPSTLSMPPESEIELSRFQNSLRSYCKSQEKEFIFFEWVSIRGTHANLQAIPIPSSKAIMVEKVFNLAAQKLGFEFVAKKFDSISDGRKFLKTQIDGDSSLFYAQIPGGTILLHHVEEKEKFPAQFGREVLAGLLNMADNADWRNRKHSKDEEKEIVEDFKSRFQEYDPNC* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0460 599 Gene3D - 296 368 - -
Gso17g0460 599 CDD MPP_CWF19_N 6 230 - -
Gso17g0460 599 SUPERFAMILY CCCH zinc finger 310 336 IPR036855 GO:0046872
Gso17g0460 599 ProSiteProfiles Zinc finger C3H1-type profile. 312 335 IPR000571 GO:0046872
Gso17g0460 599 SMART c3hfinal6 341 366 IPR000571 GO:0046872
Gso17g0460 599 SMART c3hfinal6 309 334 IPR000571 GO:0046872
Gso17g0460 599 Pfam Protein similar to CwfJ C-terminus 2 507 596 IPR006767 -
Gso17g0460 599 Gene3D - 379 498 IPR036265 -
Gso17g0460 599 PANTHER CWF19-LIKE PROTEIN 1 1 598 - -
Gso17g0460 599 ProSiteProfiles Zinc finger C3H1-type profile. 344 367 IPR000571 GO:0046872
Gso17g0460 599 Pfam Protein similar to CwfJ C-terminus 1 382 493 IPR006768 -
Gso17g0460 599 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 1 598 IPR040194 -
Gso17g0460 599 SUPERFAMILY HIT-like 384 452 IPR036265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0460 Gso-Chr17 4164171 4168795 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso17g0460 CwfJ_C_1 8.4e-37 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0460 K24939 - gmx:100782106 1164.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0460 17 4164171 4168795 Gso17g0460 17 4164171 4168795 ECH
Gso13g0754 13 21848583 21853183 Gso17g0460 17 4164171 4168795 GST