Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0454 ATGCACTCCATGGATGGTGTTTTCGCCCTCCCTGAAGCAGCCAGAGCTGATTGTCTCCGCTCTCTGGTGCAATCTTGTGGCTGCACTTACGTTTCTCTGTGGCAATATGACTCCAATTTATCCAATTTGTTCTTCTTAGATGGTTTCTACGATGCAACGAACAACCAACAAAGCTCTTCTTTAGGGAGTGTAGCTGAAAGGCTTTTACACCAATATCGGGCTTTAACGTTTGATGTCAATGATCATGAATATGTTCCTGGGGTCGTTTTCAGGAATCAGCTTCCCTACATAGAGCTGCAACTATTGGATCTTCTAAGACTGACTTCGACAGAAATACAAACAAAATTCTTTCAAGAAGCAGGGATTGAGATTGCTGTTTTCATGGGGTGCAAAAACGGAGAAATTGAGCTTGGGTTCTCCAACATTTCTCAAGTTGACATTCAGACAACACTTAAAAATTTATTTCCGCAAGATTTCTATATACATTCACAATCAACAACTGATCAAAATCCACCTTTATCATCATCATCATCATCTTCTTCTTTCATGTCATTATCCACGGGTAGGCCTGATCAATGTTCATCTTCATTATTACTCAGTAGTATTCCGGGAACTTCTCAGTACCACTTTCCTCAAACCCTTCCCACACAAACACAAACACAAACTCAAACTAGCCCACAGTACCAAGCATTAGATTTAGTTCCAGTCATTCCAAGTTATTTTCCCACACCAGAGGGTGAACATGAAGCAATAGTAAAAGCATTTATCAGTGTTATGTCTTCTTCTTCAACTTCAACTTCTCAGCAGCATCAACCCCACCAAATTGTGCCTAAGTATACTTCAGTGGTACATCCAGGAGCTACCGCTTTCAATAAATGTAGACCAGATACATTGAACCCAAATATAACACCCCAATTGGGATCCAATTTTCGCAGCCAAAGCCTACAGAAAAGATCATTTGAATTCTTTAGAAACTTAAATAATTTAACGAGAATGAGAGAACGCGTTACTCAACCTGCACCACGTCCCATTAGTACCCAGCACCAGTACCAGCAGCATACCATATCAGAGCGAAGAAGGCGTGAAAAACTCAATGAGAATTTTCAGGCACTTAGAACACTTCTTCCTCCAGGAACTAAGAAAAACAAAGCAACGATCCTTACAACAGCAACGGAGACAATGAGATCATTGATGGATGAAATTGAAAAGCTTAACATGAGAAATCAGCAGTTGATGACAGTTTTATCAGTCAAAGAAGCTACAGCTACTAGTACTGAAGAAAACAAAGCTAAACCTAGCTCCTCATATGAAAGATTGAATGTTGGGGTCTCGCATGTATCGGAATCAAGTTCATCAGAAGAGCAAATGGTGAACTTGCAAGTAACAGTGAGAGGAGAAAGTTGTCTAGTTGATCTATTGATTCAGTTATTGGAATTCTTAGAAAGGGTTCAGAACGTAAACTTTGTTTCCATGGACGCAAACAACCATATTACAGGAGAGACAGCCATTAACCAATTAACCTTCAGACTGAGGATAATTGAGGGCATTGAATGGGACGAGCATGCCTTCGAGGAAGCAGTAAGAAGAGTGGCTGCTGACACAATACAATGGCAACCACTGGAGCAATAA 1629 0.4045 MHSMDGVFALPEAARADCLRSLVQSCGCTYVSLWQYDSNLSNLFFLDGFYDATNNQQSSSLGSVAERLLHQYRALTFDVNDHEYVPGVVFRNQLPYIELQLLDLLRLTSTEIQTKFFQEAGIEIAVFMGCKNGEIELGFSNISQVDIQTTLKNLFPQDFYIHSQSTTDQNPPLSSSSSSSSFMSLSTGRPDQCSSSLLLSSIPGTSQYHFPQTLPTQTQTQTQTSPQYQALDLVPVIPSYFPTPEGEHEAIVKAFISVMSSSSTSTSQQHQPHQIVPKYTSVVHPGATAFNKCRPDTLNPNITPQLGSNFRSQSLQKRSFEFFRNLNNLTRMRERVTQPAPRPISTQHQYQQHTISERRRREKLNENFQALRTLLPPGTKKNKATILTTATETMRSLMDEIEKLNMRNQQLMTVLSVKEATATSTEENKAKPSSSYERLNVGVSHVSESSSSEEQMVNLQVTVRGESCLVDLLIQLLEFLERVQNVNFVSMDANNHITGETAINQLTFRLRIIEGIEWDEHAFEEAVRRVAADTIQWQPLEQ* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0454 542 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 533 - -
Gso17g0454 542 MobiDBLite consensus disorder prediction 165 188 - -
Gso17g0454 542 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 351 414 IPR036638 GO:0046983
Gso17g0454 542 CDD bHLH_AtbHLH_like 353 404 IPR045239 -
Gso17g0454 542 Gene3D - 345 421 IPR036638 GO:0046983
Gso17g0454 542 SMART finulus 354 403 IPR011598 GO:0046983
Gso17g0454 542 Pfam Helix-loop-helix DNA-binding domain 351 397 IPR011598 GO:0046983
Gso17g0454 542 Coils Coil 387 414 - -
Gso17g0454 542 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 397 IPR011598 GO:0046983
Gso17g0454 542 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 533 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0454 Gso-Chr17 4109508 4113085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0454 4 533 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 35.614 1.16e-73 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g0454 HLH 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0454 - - gmx:102670282 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0454 17 4109508 4113085 Gso17g0454 17 4109508 4113085 ECH
Gso13g0761 13 21929103 21933004 Gso17g0454 17 4109508 4113085 GST
Gso17g0454 17 4109508 4113085 Gso15g1406 15 15511136 15516599 PCT
Gso17g0454 17 4109508 4113085 Gso9g0541 9 6118974 6124382 PCT
Gso15g1406 15 15511136 15516599 Gso17g0454 17 4109508 4113085 PCT
Gso9g0541 9 6118974 6124382 Gso17g0454 17 4109508 4113085 PCT