Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0451 ATGGGGGGAGAAGAAGTAGCAAGAGTCAAAGCAGAGTTGTTCGACGACAACGAAAGCGATCGCAACGACGACGACGTTTTGAGCGAGAGCAAGGACTCGGGAGTGACGACGGCTCACGCAGTGAAAGAAGAGATGGATGACGGCGCCGCTAACTGGTCTTCGTCGTCGTCGACTTCGCCCAAACCGATGGAAGGGTTGCACGAGGTGGGCCCCCCTCCGTTCCTGAAGAAGACGTTTGAAATGGTGGAGGACCCTCACACCAACCCCATTGTGTCGTGGAGCCAAACTCGCCATAGTTTCGTCGTTTGGGACTCGCATGAGTTCTCCAAAACCCTTCTCCCAAAGTACTTCAAGCACAGTAATTTCTCAAGCTTCGTTCGCCAGCTCAACACCTATGGCTTTAGGAAGGTTGATTCGGACCGTTGGGAGTTTGCGAATGAAGGATTCCAAGGAGGGAAGAAGCATTTGCTGAAGAACATAAGGAGGAGGAGTAAGTGCAACAAACTGCATCAGGGAGCATTCAATATGATGAAGCCAGACGTGGATTCTGAAGTGGAGAAGCTGAAGAAAGACCAGAACATTTTGAAGGTGGAGATTCTGAAGCTGAGGCAGCAGCAGGAAAATTCTCATGTTCAGCTCACAAATGTTCAGGAGAGAATTCGGTGTGCAGAGATGAAGCAGTTTCAGATGATGTATTTCCTCACCAGAATGGCTAGAAGGCCTGCGTTTGTTGAGCAGTTAGTCCATAAGATTAGGCGAAAAAGAGAGATTGATGGTAATGACATGGTTAAGAGGCCTAGATTGATGGGAAATCCGTGCCATGTACCCTTCCCTAAGACAATGGAAACAACACCTAATTTTGATTATAGACACCAACAAGGTCATAAACAATTTGCAACATTGCAATCTGAGCTCAATGTGACAGAAGTGAACTCCAGTAGGATGGAGCACCCAACTCCCTCTCCTTTAGAAGATGAATTAGGCAACTCTTTGCAAGGGTTAAGGGCTCATGGTTGTTCTAGAGCAAGGGCACAAGATGCATCTTCTTCTGCCTATCATGTTATGTCAGAAAAACTAATGAGAGAAAATTCTATAGTTGATGAAGAACTAGATGTGAATGACTCCAATATCTATCTTGAATTAGAGGATTTGATTACTAAGCCTACAGATTGGTCTGTTGGATCTGCAAGTGGATTGGTGGAACAAACTAGTTGA 1215 0.4601 MGGEEVARVKAELFDDNESDRNDDDVLSESKDSGVTTAHAVKEEMDDGAANWSSSSSTSPKPMEGLHEVGPPPFLKKTFEMVEDPHTNPIVSWSQTRHSFVVWDSHEFSKTLLPKYFKHSNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKCNKLHQGAFNMMKPDVDSEVEKLKKDQNILKVEILKLRQQQENSHVQLTNVQERIRCAEMKQFQMMYFLTRMARRPAFVEQLVHKIRRKREIDGNDMVKRPRLMGNPCHVPFPKTMETTPNFDYRHQQGHKQFATLQSELNVTEVNSSRMEHPTPSPLEDELGNSLQGLRAHGCSRARAQDASSSAYHVMSEKLMRENSIVDEELDVNDSNIYLELEDLITKPTDWSVGSASGLVEQTS* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0451 404 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 45 388 IPR027725 -
Gso17g0451 404 SUPERFAMILY "Winged helix" DNA-binding domain 70 163 IPR036390 -
Gso17g0451 404 Pfam HSF-type DNA-binding 74 163 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g0451 404 Gene3D - 67 164 IPR036388 -
Gso17g0451 404 SMART hsfneu3 70 163 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g0451 404 MobiDBLite consensus disorder prediction 24 46 - -
Gso17g0451 404 MobiDBLite consensus disorder prediction 1 74 - -
Gso17g0451 404 ProSitePatterns HSF-type DNA-binding domain signature. 113 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g0451 404 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 45 388 - -
Gso17g0451 404 MobiDBLite consensus disorder prediction 1 17 - -
Gso17g0451 404 Coils Coil 185 205 - -
Gso17g0451 404 PRINTS Heat shock factor (HSF) domain signature 74 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g0451 404 PRINTS Heat shock factor (HSF) domain signature 112 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso17g0451 404 PRINTS Heat shock factor (HSF) domain signature 125 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0451 Gso-Chr17 4088329 4090713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0451 60 402 HSF AT2G26150 42.000 1.74e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso17g0451 HSF_DNA-bind 1.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0451 K09419 - gmx:100778060 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0451 17 4088329 4090713 Gso17g0451 17 4088329 4090713 ECH
Gso13g0763 13 21962307 21964645 Gso17g0451 17 4088329 4090713 GST