Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0449 ATGGAACCTCGTGTTGGGAATAAGTTTCGCCTGGGTCGGAAGATCGGAAGCGGCTCCTTTGGGGAGATCTATTTAGGCACTAATATTCAGACAAACGAAGAGGTTGCAATAAAGCTCGAAAATGTCAAGACAAAGCATCCCCAATTGCTGTATGAGTCCAAGTTGTACAGAATTCTCCAGGGAGGAACTGGAATTCCTAATGTCAGATGGTTTGGAGTGGAGGGAGATTACAATGTTTTAGTGATGGATCTGCTTGGACCCAGTCTTGAAGATCTATTTAACTTCTGCAGTAGAAAACTATCACTAAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTCATTCATTCAAAATCATTTCTGCATCGGGATATCAAACCGGATAACTTTCTAATGGGATTAGGAAGGCGTGCAAACCAGGTTTATGCTATTGATTTTGGTTTGGCTAAGAAATACCGAGATAGTTCAACACATCAACACATTCCTTACAGGGAAAATAAAAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGCAGAAGAGATGATCTCGAGTCTCTTGGTTATGTTTTGATGTACTTCTTGAGAGGAAGTCTTCCTTGGCAGGGTCTTAAAGCGGGAACAAAGAAACAGAAGTACGAGAAAATCAGTGAAAAAAAGGTTTCTACCTCGATTGAAGCCTTGTGTCGAGGTTATCCAACAGAATTTGCATCTTACTTCCATTACTGCCGATCATTGAGGTTTGATGATAAGCCAGATTATGCTTATCTCAAAAGGATATTCCGTGACTTGTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGACTGGACCATTTTGAAGTATCAGCAATCACAGCTAGCCACTCCTCCAACACGGGCCATTGGTCCTAGTGCTGGAACCAGTTCTGGAATGCCCCCGGCTGTTACTAATGCTGATAGGCATACAGGAGGGGAAGAAGGGCGACCTCCTGCTTTGGTTTCAGTGGATTCCTCGAGGCGGAGAATGTCAGGGCCCATTTTAAATACTTTATCAAGTGCCAATGTCTTGGGTCAGTCAAGTGGATCATCTAGGCGGGCTGCTGTTTCTAGTAGCCGTGATGCATTTGTTGGTGCTGAGTCAGATATTCGGACTCGCACTGCTGAGGCTAGCCCTGGAGCAGCACATCGAGGTTTGAGTGGGCAAAGAAGTTCACCAATTGGATCTTCTGATCCTAAGAGAGTTGTATCATCCGGGAGAAATGCTTCTCATGTGAAAAATTATGACACTGCGCTTAGGGGCATGGAAGGTTTGCAATTAGAGAATGATGAGAGGACCCATTATTAA 1365 0.4344 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRAIGPSAGTSSGMPPAVTNADRHTGGEEGRPPALVSVDSSRRRMSGPILNTLSSANVLGQSSGSSRRAAVSSSRDAFVGAESDIRTRTAEASPGAAHRGLSGQRSSPIGSSDPKRVVSSGRNASHVKNYDTALRGMEGLQLENDERTHY* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0449 454 MobiDBLite consensus disorder prediction 362 376 - -
Gso17g0449 454 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0449 454 MobiDBLite consensus disorder prediction 408 431 - -
Gso17g0449 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gso17g0449 454 MobiDBLite consensus disorder prediction 362 436 - -
Gso17g0449 454 MobiDBLite consensus disorder prediction 303 346 - -
Gso17g0449 454 PANTHER CASEIN KINASE I-LIKE 356 437 - -
Gso17g0449 454 PANTHER CASEIN KINASE I-LIKE 1 312 - -
Gso17g0449 454 PANTHER CASEIN KINASE-RELATED 356 437 - -
Gso17g0449 454 PANTHER CASEIN KINASE-RELATED 1 312 - -
Gso17g0449 454 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Gso17g0449 454 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0449 454 MobiDBLite consensus disorder prediction 303 322 - -
Gso17g0449 454 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0449 454 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gso17g0449 454 CDD STKc_CK1_delta_epsilon 8 282 - -
Gso17g0449 454 Gene3D Transferase(Phosphotransferase) domain 1 1 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0449 Gso-Chr17 4066613 4072908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0449 7 223 EF-hand Containing Proteins AT2G17890 26.667 1.19e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gso17g0449 Pkinase 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0449 K02218 - gmx:100811567 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0449 17 4066613 4072908 Gso17g0449 17 4066613 4072908 ECH
Gso13g0764 13 21973179 21979339 Gso17g0449 17 4066613 4072908 GST
Gso17g0449 17 4066613 4072908 Gso15g1413 15 15663969 15676150 PCT
Gso17g0449 17 4066613 4072908 Gso9g0551 9 6250244 6256556 PCT
Gso15g1413 15 15663969 15676150 Gso17g0449 17 4066613 4072908 PCT
Gso9g0551 9 6250244 6256556 Gso17g0449 17 4066613 4072908 PCT