Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0446 ATGTGCGGTGACGCCACGAACTGGGACGAAGACGCATACAGAGAAACCATTCTCAAGGAGAGGGAAATCCAAACCCGAACCGTTTTCCGAACCGCTTGGGCCCCACCCTACACCTCTAACCTCGACACTCTCATCCTTGCCTCTAGCGACGGTTCCGTCGCATCCTACTCCATCTCTTCCTCCATCGCCGCCTCTAAGATAAAAAATCCATTCGGTTTCGTCAATGCCGATACAGATGAGTTGTTGGCTGAACCAAATTGCTTCGTTCAAGCGCACGATGGACCTGCTTACGATGTCAGATTTTATGGTGATGGCGAAGATGCTCTGTTGCTGAGCTGTGGTGATGATGGTCGGATTCGAGGATGGAGATGGAACGAATTTTCAAGCTCAAATTATTCTGTTTCTTCCCAAGGAAATGATATCAAGCCTGTACTTGATGTGGTGAATCCCCAACACAAAGGTCCTTGGGGTGCGCTTTCACCTATCCCTGAGAATAATGCTATTGCTGTCAATACTCAGGGGGGATCTGTTTTTGCTGCATCTGGCGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTGAAAATGGTATTCAAGGGGCACATGGACTATTTGCATTGTATAGTTGCTCGCAACTCATTAGATCAGATCATAACAGGTTCGGAGGATGGGACGACTCGAATTTGGGATTGCAAAAGTGGAAAGTGTACGCAAGTGATTGATCCAGCAAGAGATTTGAAATTAAAGGGATCTGCTTCTTGGGTTGGCTGTGTTGCTTTAGATGCAAGTGAAAGCTGGTTGGCTTGCAGTAGTGGACGTAATATATCACTTTGGAACCTTCCTGCTTCAGAATGCATATCAAAGATTCCTACCCGTGCTTGTGTACAAGACATGTTATTTGACAATAATCAAATTTTGACAGTTGGTACAGATCCTCTACTCAATCGCTTTGACATGAACGGCACTATCCTTTCACAAATACAGTGTGCTCCTTCGTCATCTTTTTCTATCTCCTTACATCCTGCAGGGGTTATGGCAGTTGGAGGTTATGGATGTCTTGTTGATGTTATCTCACAATTTGGCAGCCACATGTGCACGTTTCATTGCCAGTCCTGGTTTTTATTTATCACTTCTCTCTCTCTCACACACACACACATACTCGCTTCCCTCTCTCTGCGTTCGGCACCAGCGAAACGCTCTTCGTTATCTTTTTCTCGACTCCGCGGCGTAGATCCGAGGAGTTCGGGAAACCCTAACTCATCTTCCTTCACAACAGAACAACGCTTCTTTTCCCTATCCATCATCTCAACTGAAGTCATGGCTGGACTAGCACCTGAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTTACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGATAGTTTTGACGCTATGGGTTTGCAGGAGAATCTTCTCAGGGGAATTTACGCATACGGTTTTGAGAAGCCATCAGCCATTCAGCAAAGGGGGATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAATCTGGAACTGGGAAGACGGCCACTTTCTGCTCTGGTATTCTGCAGCAACTTGACTATAGCTTGACTCAATGCCAGGCCTTGGTTTTGGCACCAACTCGTGAGCTTGCTCAGCAGATTGAGAAAGTTATGCGGGCACTTGGAGATTATCAAGGTGTGAAGGTTCATGCTTGTGTGGGAGGTACCAGTGTGCGTGAGGACCAGCGCATTCTATCTAGTGGTGTTCATGTTGTGGTTGGTACCCCTGGTCGTGTGTTTGATATGCTGCGCCGACAGTCACTTCAGCCAGACCACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGAGGTTTCAAGGATCAGATCTACGATATATTTCAGCTGCTTCCATCTAAGATTCAAGTGGGAGTTTTCTCTGCCACAATGCCTCCTGAGGCCCTTGAGATCACCAGGAAGTTTATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATTAAGCAATTTTATGTCAATGTTGAAAAGGAGGAATGGAAGCTGGACACACTCTGCGATCTTTATGAGACATTAGCTATCACTCAGAGTGTCATTTTTGTTAACACCAGAAGGAAAGTTGATTGGTTGACTGACAAGATGAGAAGCCGTGACCACACAGTCTCAGCAACCCACGGAGACATGGACCAGAATACCAGGGACATTATTATGCGTGAATTCCGTTCTGGGTCTTCCCGTGTCTTGATAACCACTGATCTTTTGGCTCGTGGTATTGATGTCCAACAAGTGTCTCTAGTTATAAATTTTGATCTCCCAACACAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGGAGGTTCGGAAGGAAGGGTGTTGCGATCAACTTTGTCACAAAGGATGACGAGAAAATGCTGTTTGACATCCAGAAGTTTTACAACGTGCAAGTTGAGGAGCTGCCTTCAAATGTTGCTGAGCTCCTTTGA 2565 0.4589 MCGDATNWDEDAYRETILKEREIQTRTVFRTAWAPPYTSNLDTLILASSDGSVASYSISSSIAASKIKNPFGFVNADTDELLAEPNCFVQAHDGPAYDVRFYGDGEDALLLSCGDDGRIRGWRWNEFSSSNYSVSSQGNDIKPVLDVVNPQHKGPWGALSPIPENNAIAVNTQGGSVFAASGDSCAYCWDVETGKVKMVFKGHMDYLHCIVARNSLDQIITGSEDGTTRIWDCKSGKCTQVIDPARDLKLKGSASWVGCVALDASESWLACSSGRNISLWNLPASECISKIPTRACVQDMLFDNNQILTVGTDPLLNRFDMNGTILSQIQCAPSSSFSISLHPAGVMAVGGYGCLVDVISQFGSHMCTFHCQSWFLFITSLSLTHTHILASLSLRSAPAKRSSLSFSRLRGVDPRSSGNPNSSSFTTEQRFFSLSIISTEVMAGLAPEGSQFDARQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLQPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDEKMLFDIQKFYNVQVEELPSNVAELL* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0446 854 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 512 682 IPR014001 -
Gso17g0446 854 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 481 509 IPR014014 GO:0003724
Gso17g0446 854 SMART WD40_4 243 281 IPR001680 GO:0005515
Gso17g0446 854 SMART WD40_4 82 123 IPR001680 GO:0005515
Gso17g0446 854 SMART WD40_4 322 360 IPR001680 GO:0005515
Gso17g0446 854 SMART WD40_4 155 190 IPR001680 GO:0005515
Gso17g0446 854 SMART WD40_4 193 232 IPR001680 GO:0005515
Gso17g0446 854 SMART WD40_4 284 320 IPR001680 GO:0005515
Gso17g0446 854 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 628 636 IPR000629 -
Gso17g0446 854 SUPERFAMILY WD40 repeat-like 33 363 IPR036322 GO:0005515
Gso17g0446 854 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 232 - -
Gso17g0446 854 Gene3D - 7 152 IPR015943 GO:0005515
Gso17g0446 854 CDD DEADc_EIF4A 485 683 - -
Gso17g0446 854 Pfam DEAD/DEAH box helicase 506 667 IPR011545 GO:0003676|GO:0005524
Gso17g0446 854 Pfam WD domain, G-beta repeat 250 281 IPR001680 GO:0005515
Gso17g0446 854 Pfam WD domain, G-beta repeat 197 232 IPR001680 GO:0005515
Gso17g0446 854 Pfam Helicase conserved C-terminal domain 707 815 IPR001650 -
Gso17g0446 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 550 835 IPR027417 -
Gso17g0446 854 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Gso17g0446 854 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 464 854 - -
Gso17g0446 854 Gene3D - 153 397 IPR015943 GO:0005515
Gso17g0446 854 PANTHER RNA HELICASE 464 854 - -
Gso17g0446 854 SMART helicmild6 734 815 IPR001650 -
Gso17g0446 854 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 693 854 IPR001650 -
Gso17g0446 854 Gene3D - 471 689 IPR027417 -
Gso17g0446 854 Gene3D - 690 854 IPR027417 -
Gso17g0446 854 CDD SF2_C_DEAD 694 824 - -
Gso17g0446 854 SMART ultradead3 500 697 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0446 Gso-Chr17 4039261 4049823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0446 442 854 Eukaryotic Initiation Factors Gene Family AT1G72730 88.406 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0446 K03257 - jre:109009115 1317.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0446 17 4039261 4049823 Gso17g0446 17 4039261 4049823 ECH
Gso17g0446 17 4039261 4049823 Gso15g1415 15 15710831 15714849 PCT
Gso17g0446 17 4039261 4049823 Gso9g0553 9 6289418 6293368 PCT
Gso15g1415 15 15710831 15714849 Gso17g0446 17 4039261 4049823 PCT
Gso9g0553 9 6289418 6293368 Gso17g0446 17 4039261 4049823 PCT