Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0443 ATGTCCACACCGTCGCGGAGATCGGTTGCCGTTGCCGTGAGCGGCGGGTCCAAGGGTAGCCGGCGAGCAGTGCAGTGGGCTGCGGACAATTTGGTCCCTCAAGCCGATAGGTTCATCTTAGTTCACGTCATCCCTCGAATCACTTCAATTGCAACACCAACTGGAGAGTATATTCCTATTTCCGAAGCAGACGCCGATGTGTTTGCAGCTTCTGTGCTGGATGCGAAACTAAAATCTGAACAAATCTTTGTTCCGTTCAAGAAACTCTGTGATTCAAACACGATGGAAACAGTACTGCTAGAAGATGACAATGCTGCAGAAGCACTTCTTAGCTTTATTTCGGAGTCCGGGTCCCAAATATTAGTGCTGGGTTCTGACTCCTCAAATTTCATAACAAGGAAGCTAAAAGGACCTGGGATACCAACTACCATTCTAAGATGTGCTCCTGACAGTTGTGATGTATATATTGTAGCTAGAGATAGAATTATATCCAAGTTGGCTGACTTTTCATCTTCACGTTCTCATGAGACTAGCCCTAGGTACTTCTTGTCTACTAAAGTAAATAAAGAGGACAATGGCATTGGCAGAGAAATGTCTGGAATTAGTTCATCCTCAACTGAACCTAAAATTCTAAGGAATTTCCGGTTTTTATCCATATCAGAGCGTAGTTACATTGGTCTGCAATCATCTAGTCGTAGGAATTCTTTTGAAAATTCTACCAAAAATGAAGAACAAAATTCAGAAAACTGTGGAGATGATATTGAAACTATCAGCCTCCACTCATTTGATTCCATTGCTTCTGCACAACGTGAACAGTTAGTCATGCAAGAAGAAGTGGAACGGCTGCAGCTGGAGTTGCAAAATACTATCACCATGTACAAACAGGTCTGTGAAGAACTGGTTCAAGCTCAAAACCAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAATAGTTAATGCTTCCTTAAAAAGAGAGGAGATTTTGAGAAAGTTTGCTGCTGAAGAGAAAACAAAGTACTTAAAAGTCATGAAGGAGCTTGAGGAGGCGAAAAATAAGTTTTCCAAAGAGTCATATGAAAGACAGATGGCTGAACTTGATGTCCTTAGAGAATCAATAGAAAGACAGAGAATTGTGGATACATTGCTCTCAAATGACAGGAGATACAGAAAGTACACCATGGATGAAATCAAGCTAGCAACGAACTTTTTTGCTGAGGACTTGATAATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGTAATCTTGATCACACACCAGTAGCTGTAAAGGTTCTGCACCAGGACGCAATCAACAAGAAAGAGGAGTTTCTAAAAGAGGTTGAGATTCTTAGTCAACTACATCATCCTAATATGGTATTGTTACTTGGAGCCTGTCCTGAGAGTGGCTGTCTTGTTTATGAATACATGGAAAATGGAAGTCTAGAAGACTATCTTCTAAAAAAAAATGGAAAACCACCACTTCCTTGGTTTTTTCGATTTCGTATAGTTTTTGAAATGGCTTGTGGGCTCTCATTCTTGCATAATTCAAAGCCAGAGCCTATTGTCCATCGAGATATAAAACCTGGCAATGTCTTGTTAGACAGAAATTATGTGAGCAAAATTGCAGATGTTGGGCTGGCTAAACTCCTTGTAGAAGTCGTGCCTGACAATGTCACAGAGTACAGAGAATCAATTCTTGCCGGTACTCTGCATTACATGGACCCAGAGTATCAGAGAACTGGCACTGTCAGACCAAAATCAGATGTATATGCTTTTGGAGTTATAACTCTCCAATTGATAACTGGTCGACATGCGCGTGGACTCATTGTGACTGTTGAAGATGCAATTACAAATGGCTCCTTCCGTGATATTTTAGATCCATCAGCTGGAGATTGGCCACTGGATGAGACAGTGGAATTGGCTCAAGTAGCCCTTAAATGCACTGCACTCAGATGCAGAGATAGACCAGAGATTGATACTGAAGTTCTTCCAATGCTCCAAAGATTTTCTGATGCGGCAAATGCTAGTGCAAGGATGGGAAGAAATAGTGTAAGTGCGCCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGGTTCACTTATGAGTACGTAGCAATCAAGGCATGGCTCAGCAAACACAATGTGTCACCCATGACAAAGCTTAAACTTCAGCATTCTGTGTTGACTCCAAACCATACTTTACGTTCAGCCATTCAGGAGTGGAAGTCTGGAGTGACCTTTTGA 2283 0.4152 MSTPSRRSVAVAVSGGSKGSRRAVQWAADNLVPQADRFILVHVIPRITSIATPTGEYIPISEADADVFAASVLDAKLKSEQIFVPFKKLCDSNTMETVLLEDDNAAEALLSFISESGSQILVLGSDSSNFITRKLKGPGIPTTILRCAPDSCDVYIVARDRIISKLADFSSSRSHETSPRYFLSTKVNKEDNGIGREMSGISSSSTEPKILRNFRFLSISERSYIGLQSSSRRNSFENSTKNEEQNSENCGDDIETISLHSFDSIASAQREQLVMQEEVERLQLELQNTITMYKQVCEELVQAQNQALLLSSESLEETKIVNASLKREEILRKFAAEEKTKYLKVMKELEEAKNKFSKESYERQMAELDVLRESIERQRIVDTLLSNDRRYRKYTMDEIKLATNFFAEDLIIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPNMVLLLGACPESGCLVYEYMENGSLEDYLLKKNGKPPLPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNVLLDRNYVSKIADVGLAKLLVEVVPDNVTEYRESILAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIVTVEDAITNGSFRDILDPSAGDWPLDETVELAQVALKCTALRCRDRPEIDTEVLPMLQRFSDAANASARMGRNSVSAPSQYYCPILQEIMDDPYIAADGFTYEYVAIKAWLSKHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVTF* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0443 760 Pfam U-box domain 690 755 IPR003613 GO:0004842|GO:0016567
Gso17g0443 760 CDD STK_N 8 159 - -
Gso17g0443 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Gso17g0443 760 Pfam Universal stress protein family 7 136 IPR006016 -
Gso17g0443 760 SUPERFAMILY RING/U-box 684 755 - -
Gso17g0443 760 Gene3D HUPs 1 157 IPR014729 -
Gso17g0443 760 Coils Coil 265 285 - -
Gso17g0443 760 PANTHER OS02G0152300 PROTEIN 8 757 - -
Gso17g0443 760 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 157 - -
Gso17g0443 760 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 8 757 - -
Gso17g0443 760 CDD RING-Ubox_WDSUB1_like 693 733 - -
Gso17g0443 760 MobiDBLite consensus disorder prediction 230 245 - -
Gso17g0443 760 ProSitePatterns Protein kinases ATP-binding region signature. 412 433 IPR017441 GO:0005524
Gso17g0443 760 SMART serkin_6 406 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0443 760 SMART Ubox_2 692 754 IPR003613 GO:0004842|GO:0016567
Gso17g0443 760 MobiDBLite consensus disorder prediction 230 251 - -
Gso17g0443 760 Coils Coil 332 378 - -
Gso17g0443 760 Gene3D Transferase(Phosphotransferase) domain 1 479 689 - -
Gso17g0443 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 690 758 IPR013083 -
Gso17g0443 760 ProSiteProfiles U-box domain profile. 688 760 IPR003613 GO:0004842|GO:0016567
Gso17g0443 760 Pfam Protein tyrosine and serine/threonine kinase 411 661 IPR001245 GO:0004672|GO:0006468
Gso17g0443 760 SUPERFAMILY Protein kinase-like (PK-like) 389 662 IPR011009 -
Gso17g0443 760 ProSiteProfiles Protein kinase domain profile. 406 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0443 760 Gene3D Phosphorylase Kinase; domain 1 385 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0443 Gso-Chr17 4012569 4019935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0443 4 756 Plant U-box Gene Family AT5G57035 53.590 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gso17g0443 PK_Tyr_Ser-Thr 8.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0443 - - gmx:100805896 1449.49