Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0439 ATGGAGGAAATATCTTCTAGTGTTGCAGTACCTTTTACACTTGGTGTTGGAAATTTGATTCAAAAGGAGTCCGCGGTGACGACTCACATGGAGATAACTGGGCTGAAGCTCATGGCAAATACAGCAGCGGCTGCTTTAATGTTAAATCCTGCAGTGGAGTGTTTAAAGGAGAATCAAGTTGGAGCTGCTGCTCTTGTCTCAGAAATGGTTATTGAATGTGAGAGTAATTGGGTCTTGAATGAAAGCCATAACCAGGCAATAAAGGAAGATGAATTGATGTTAGCAGTGGATTTTCAGTCTCTGCATAGTTCAAGCTCTCAATCTGTGGCTAATGGCAAAAGTGATCCTTGTAGGGAGGAAGCTGCAGCATTGAAGAGTAGTTTTTCTGAAATAGATTCACCAATCATGATCAAGGTTGATGATGATGTTGATGGTAAGTCCGGAATAAGCGAGCTGTGTCCATCAATGAAGCCGCCAGTGGAGGAAACAGTTTCTGTTGCTATGGATATTACTAGTGAGGATCAAAGTGGATCAGATGAGTCTGATCCTAAACCATCTGCTGTGCTTCTTGATCAGTTGCCAGGGGAGAGTAAAACATGGAGAACAGGCAACCCAAATGCTTTGGAATTGAATAGTGGACCTCTCTGGGGTTGTTCATCAATTTGTGGAATGAGGCAGGAGATGGAAGATGCTATTTCTGTTAAGCCTCGACTTTTTCAAGTTTCTTCACAGATGCTAGTGAATGACCATGTGAATGAGAACGAAAAACAGTCACTAGCCCACTTTTTTGCTGTCTATGATGGACATGGGGGCCTTCAGGTTGCCAATTACTGCCAGGAACGTCTTCATTCAAAATTGATTGAGGAGATAGAGACTGCACAATCAACTTCGGCTGAAACAAATGGGAGAGGTGATTGGCAGGACCAATGGAAGAAAGCATTTATCAATTGTTTTCAGAAAATGGATGATGATGTGGGAGGAATTGGTGCAAGTAACAGGGGAAACAACAGTGGTGGGTCTGAGTCTAATATTAAAACTGTTGCTCCTGAGACTGCTGGCTCCACTGCAGTGGTTGCCATTTTAAGCCAAACCCACATCATAGTCGCAAACTGTGGAGATTCAAGAACTGTCTTATACCGTGGAAAAGAAGCCATGCCATTGTCTTCTGACCACAAACCAAATAGAGAGGACGAGTGGGCTAGGATAGAAGCTGCGGGAGGAAGAGTCATACATTGGAAAGGATATCGAGTTCTTGGTGTCTTGGCAATGTCAAGGTCCATAGGTGATAGATACCTGAAACCATGGGTAATTCCAGAACCCGAAGTCAATATTGTGCGTCGAGAGAAAAACGATGAGTGTCTCATTCTAGCAAGTGATGGTTTATGGGATGTAATGACAAATGAAGAAGCATGTGAGGTTGCAAATAAGCGAATCCTTCTTTGGCACAAGAAGTTTGGTGACAATGGCCCAACAGGACGCAGTGAAGGAGCTGATCCTGCAGCTCAGTCCGCCGCAGAGTATCTAACTAAGCTTGCCATCCACAGGGGAAGCCAAGATAACATCTCTGTAATTGTGATAGACTTAAAGGCTCAAAGAAAAATTAAGAGAAAGCCATAA 1617 0.4341 MEEISSSVAVPFTLGVGNLIQKESAVTTHMEITGLKLMANTAAAALMLNPAVECLKENQVGAAALVSEMVIECESNWVLNESHNQAIKEDELMLAVDFQSLHSSSSQSVANGKSDPCREEAAALKSSFSEIDSPIMIKVDDDVDGKSGISELCPSMKPPVEETVSVAMDITSEDQSGSDESDPKPSAVLLDQLPGESKTWRTGNPNALELNSGPLWGCSSICGMRQEMEDAISVKPRLFQVSSQMLVNDHVNENEKQSLAHFFAVYDGHGGLQVANYCQERLHSKLIEEIETAQSTSAETNGRGDWQDQWKKAFINCFQKMDDDVGGIGASNRGNNSGGSESNIKTVAPETAGSTAVVAILSQTHIIVANCGDSRTVLYRGKEAMPLSSDHKPNREDEWARIEAAGGRVIHWKGYRVLGVLAMSRSIGDRYLKPWVIPEPEVNIVRREKNDECLILASDGLWDVMTNEEACEVANKRILLWHKKFGDNGPTGRSEGADPAAQSAAEYLTKLAIHRGSQDNISVIVIDLKAQRKIKRKP* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0439 538 CDD PP2Cc 217 528 IPR001932 -
Gso17g0439 538 PANTHER ALPHABET, ISOFORM E-RELATED 84 538 - -
Gso17g0439 538 ProSitePatterns PPM-type phosphatase domain signature. 262 270 IPR000222 GO:0043169
Gso17g0439 538 Gene3D - 205 538 IPR036457 -
Gso17g0439 538 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 84 538 - -
Gso17g0439 538 ProSiteProfiles PPM-type phosphatase domain profile. 215 528 IPR001932 -
Gso17g0439 538 SMART PP2C_4 205 526 IPR001932 -
Gso17g0439 538 SUPERFAMILY PP2C-like 213 529 IPR036457 -
Gso17g0439 538 Pfam Protein phosphatase 2C 238 521 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0439 Gso-Chr17 3977681 3981155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0439 1 537 PP2C-type Phosphatase Gene Family AT1G17550 44.118 3.01e-135 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0439 K14497 - gmx:100802159 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0439 17 3977681 3981155 Gso17g0439 17 3977681 3981155 ECH
Gso13g0772 13 22059903 22063481 Gso17g0439 17 3977681 3981155 GST
Gso17g0439 17 3977681 3981155 Gso15g1422 15 15834850 15838949 PCT
Gso17g0439 17 3977681 3981155 Gso9g0561 9 6425260 6429418 PCT
Gso15g1422 15 15834850 15838949 Gso17g0439 17 3977681 3981155 PCT
Gso9g0561 9 6425260 6429418 Gso17g0439 17 3977681 3981155 PCT