Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0438 ATGAAGAAAGGAAACTTGGGTCTTGGTCTCAAACTCTCAGTTCCTGTCTCTGATCAATCTAATTTTGCCAAGTTCCTGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTTCGAATTGTCTCTCAGAATGATGTCGAAGCTCCACCTCCAATCAAGCCTACAGACAACCAGTTAGCTTTAGCAGACATAGATGTAATCAAAGTTGTTGGAAAGGGAAATGGAGGGGTAGTCCAATTGGTACAACACAAATGGACTAGTCAGTTTTTTGCGTTGAAGGTAATTCAGATGAATATTGAGGAGTCTATGCGCAAGCAGATTACACAAGAGCTGAAAATTAATCAACAAGCACAATGCCCTTATGTTGTTGTCTGTTATCAATCATTCTATGAAAACGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGTTCCTTAGCTGATCTGCTGAAGAAAGTTAAAACAATTCCAGAGTCTTATCTTGCTGCCATCTGTAAGCAGGTGCTGAAGGGTCTAGTTTATCTCCACCACGAAAGGCATATTATCCACAGAGACTTAAAACCTTCTAATTTGTTAATAAATCATATTGGTGAAGTAAAGATCACTGACTTTGGTGTGAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACTTTCATTGGAACCTGCAACTATATGTCTCCAGAGAGAATCAATGGAAGCCAGGAAGGCTACAACTTCAAAAGTGATATATGGAGTTTGGGACTAATATTACTTGAGTGTGCTTTGGGTCGGTTTCCATATGCACCGCCTGATCAAAGCGAAACATGGGAAAGCATTTATGAGCTTATTGAAGCCATTGTTGAGAAACCTCCTCCTAGTCCTCCATCTGAACAATTTTCTACAGAATTTTGCTCATTTATCTCTGCATGTCTTCAGAAAGACCCAAAGGATCGGCTGTCAGCTCAGGAATTAATGGCACATCCTTTTGTCAACATGTATGATGACTTGGAAGTGGATCTTTCAGCTTACTTCTCGAATGCAGGATCTCCTCTTGCAACCTTATAA 1071 0.4034 MKKGNLGLGLKLSVPVSDQSNFAKFLTESGTFKDGDLLVNRDGVRIVSQNDVEAPPPIKPTDNQLALADIDVIKVVGKGNGGVVQLVQHKWTSQFFALKVIQMNIEESMRKQITQELKINQQAQCPYVVVCYQSFYENGVISIILEYMDGGSLADLLKKVKTIPESYLAAICKQVLKGLVYLHHERHIIHRDLKPSNLLINHIGEVKITDFGVSAIMESTSGQANTFIGTCNYMSPERINGSQEGYNFKSDIWSLGLILLECALGRFPYAPPDQSETWESIYELIEAIVEKPPPSPPSEQFSTEFCSFISACLQKDPKDRLSAQELMAHPFVNMYDDLEVDLSAYFSNAGSPLATL* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0438 356 CDD PKc_MAPKK_plant_like 85 336 - -
Gso17g0438 356 Gene3D Transferase(Phosphotransferase) domain 1 150 352 - -
Gso17g0438 356 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0438 356 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Gso17g0438 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Gso17g0438 356 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0438 356 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 356 - -
Gso17g0438 356 SUPERFAMILY Protein kinase-like (PK-like) 63 339 IPR011009 -
Gso17g0438 356 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0438 356 PANTHER MAP KINASE KINASE 1 356 - -
Gso17g0438 356 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0438 Gso-Chr17 3972443 3977535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0438 1 327 MAP Kinase Kinase Gene Family AT4G29810 67.560 1.97e-171 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gso17g0438 Pkinase 1.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0438 K20603 - gmx:547701 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0438 17 3972443 3977535 Gso17g0438 17 3972443 3977535 ECH
Gso13g0773 13 22063631 22068620 Gso17g0438 17 3972443 3977535 GST
Gso17g0438 17 3972443 3977535 Gso15g1423 15 15838870 15844553 PCT
Gso15g1423 15 15838870 15844553 Gso17g0438 17 3972443 3977535 PCT