Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0436 ATGGTTTGGTTTCAATGCGAAGATTGCGGAGACAACCTCAAAAAGCCCAAGTTGTCTAGTCACTTCCGAACTTGCTCTGCCTACAAATTGTCGTGCATTGACTGTGGGGAAATATTTGGGCGTGATACCGTTCAGGATCACACGCAGTGTATCACAGAAGCGGAGAAATATGGACCAAAAGGCCAAGGAAAAACTTTTAACGTTGCAACTGCCAAGCCTAATAAGGATAGCAAGCAAAGGCCTGAAGTTGATATTAATGTGGGGTTATCTGATCGGCCTCCTTGGTTCTGTAGTCTCTGCAATACGAAAGCTACAAGTAAGCAAACACTTCTTCTCCATGCGGATGGAAAGAAACACAGGGCAAAGGCTAGAGCATTCCATGCTTCAAAGCAACCACCAGTCGAGGCAGACAAATCTGCCACTGATGCAAAGGTTGCTGTGGAGATTGCTCCTAATGATGAGGTGAGAGATGACAAAATTGGAGAGCTGCCAAAACTGCAAGAATCTTCTAAACAAAATAACTCAAAACCAGGGAATGAAATTTCATCAGCAAAGAAAAAGAGGAAACTTGAAGCATTGGAGGATGACCTTATTAAGAAAACCAAGAATGACACTTCAGTTGACATGGGAAATGGAGAAGTAATTCAGGGTGAAGAGAGCAATTTCAAGAAAGAAGGGAGTGCTGTCAAAAATAAAATTAAATGGAAGAAGTTCATTAAATCAGCCTTGAAATCTCATCCTGATGGAATTTTGAAGATGAAGAAACTGAGAAAAGTTGTCCTCAAAGCACTGCAGGAATCTGGCATTGCAGTGGATGATGAAGCTGAATTGAGTGAGGCGCTTGAGCAGAAGATCAATTCCAGCTCCAGATTTGCAGTTGAGAACAAGTATGTGCGACTGCTGGCCAAAGATTGA 915 0.424 MVWFQCEDCGDNLKKPKLSSHFRTCSAYKLSCIDCGEIFGRDTVQDHTQCITEAEKYGPKGQGKTFNVATAKPNKDSKQRPEVDINVGLSDRPPWFCSLCNTKATSKQTLLLHADGKKHRAKARAFHASKQPPVEADKSATDAKVAVEIAPNDEVRDDKIGELPKLQESSKQNNSKPGNEISSAKKKRKLEALEDDLIKKTKNDTSVDMGNGEVIQGEESNFKKEGSAVKNKIKWKKFIKSALKSHPDGILKMKKLRKVVLKALQESGIAVDDEAELSEALEQKINSSSRFAVENKYVRLLAKD* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0436 304 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Gso17g0436 304 SUPERFAMILY beta-beta-alpha zinc fingers 87 127 IPR036236 -
Gso17g0436 304 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Gso17g0436 304 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Gso17g0436 304 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Gso17g0436 304 Coils Coil 183 203 - -
Gso17g0436 304 Gene3D - 1 50 - -
Gso17g0436 304 Pfam Zinc-finger of C2H2 type 95 119 - -
Gso17g0436 304 MobiDBLite consensus disorder prediction 163 187 - -
Gso17g0436 304 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 301 IPR039999 GO:0003677
Gso17g0436 304 SMART ZnF_U1_5 92 126 IPR003604 GO:0003676|GO:0008270
Gso17g0436 304 MobiDBLite consensus disorder prediction 122 143 - -
Gso17g0436 304 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Gso17g0436 304 MobiDBLite consensus disorder prediction 166 180 - -
Gso17g0436 304 Gene3D Classic Zinc Finger 89 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0436 Gso-Chr17 3958578 3965453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0436 77 220 C2H2 Transcription Factor Family AT2G19380 40.972 3.59e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0436 K15263 - gmx:100790703 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0436 17 3958578 3965453 Gso17g0436 17 3958578 3965453 ECH
Gso13g0776 13 22108284 22111021 Gso17g0436 17 3958578 3965453 GST