Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0431 ATGGACGGTGGTGGAGTGAACTACAACCCTCGCACCGTGGAACAGGTTTTCCGGGACTTCAAGGGCCGTAGAGCTGGCATGATCAAGGCTCTCACCACTGATGTTGAAGAATTTTTCCAGCAGTGCGATCCTGAAAAGGATAATCTTTGTCTGTACGGATTCCCTAATGAGCAATGGGAAGTTAATTTACCTGCGGAAGAAGTTCCTCCGGAGCTTCCTGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGACAAGGACTGGCTGTCTTTGGTTGCCGTTCACAGCGATGCATGGTTACTTGCAGTGGCTTTCTACTTTGGGGCACGATTTGGTTTTGATAATGCTGACAGGAAACGCCTGTTCTCTATGATTAATGATTTACCAACAATATTTGAGATTGTGACTGGAAGCGCAAAAAAACAGACGAAGGAAAAATCATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAAGAGGTACTGGATGAAGAAGATGACGAGGAGCATGAGGAGACCTTGTGTGGGGCATGTGGGGAGCACTATGCATCCGATGAGTTCTGGATTTGTTGCGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCCAGGGCCGAACACATCAAGCAGTATAAGTGCCCCTCATGCAGCAATAAGAGAGCACGGCCTTGA 759 0.4717 MDGGGVNYNPRTVEQVFRDFKGRRAGMIKALTTDVEEFFQQCDPEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDNADRKRLFSMINDLPTIFEIVTGSAKKQTKEKSSISNHSSNKSKSGSKGRGSESGKYSKETKDEEEEVLDEEDDEEHEETLCGACGEHYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0431 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Gso17g0431 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Gso17g0431 252 CDD PHD_AL_plant 198 248 IPR044104 -
Gso17g0431 252 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 5 252 - -
Gso17g0431 252 Pfam Alfin 12 139 IPR021998 GO:0006355|GO:0042393
Gso17g0431 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Gso17g0431 252 Pfam PHD-finger 199 248 IPR019787 -
Gso17g0431 252 PANTHER CPG BINDING PROTEIN 5 252 IPR045104 GO:0006355|GO:0042393
Gso17g0431 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Gso17g0431 252 MobiDBLite consensus disorder prediction 146 192 - -
Gso17g0431 252 MobiDBLite consensus disorder prediction 146 169 - -
Gso17g0431 252 SMART PHD_3 198 246 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0431 Gso-Chr17 3916809 3920756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0431 1 251 Alfin-like Transcription Factor Family AT3G42790 72.908 3.32e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gso17g0431 Alfin 4.2e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0431 - - gmx:100170695 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0431 17 3916809 3920756 Gso7g0315 7 2938424 2942273 ECH
Gso17g0431 17 3916809 3920756 Gso14g0872 14 10084792 10090042 ECH
Gso17g0431 17 3916809 3920756 Gso17g0431 17 3916809 3920756 ECH