Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0429 ATGAAGCCATTCTTGTCGAATCATACTGATTCTATGTACAATTGTTCCCAAGTTGGTTGTAGTCATCCAATGGCTCATACTTCTTATCCCTGTGGTGATCCTTATTTTGGTAGTTCAATAGTTGCTTATGGACCACAGGCTATTAATCAACAAATGGTGCCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCCAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAAGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCACGCATTGAACAGGGTTAGGGGATCTGGGGGACGCTTTCTTAGCGCCAAACAGCTGCCACAGTCTAATGCAGAACTAGTCACTGATGCCTATCAAAAGAAAGATGCATCAGAGGCAGAAAATCACCCCTCAAGCACCGGTGAAAATGCATCTATCACATTCACAGCCATCTCTGCCTTAACTAGTATGTCCAGTAACAGTGTCAATTTCCCCAACATGGCTGGATCATCGCAATGCAGTGGGGGACTCACCTTTGGTGCTGGAGCTCTCCAATGTACTTCAGTTGGCCGATGA 642 0.4564 MKPFLSNHTDSMYNCSQVGCSHPMAHTSYPCGDPYFGSSIVAYGPQAINQQMVPQMLGLASTRIALPVDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSAKQLPQSNAELVTDAYQKKDASEAENHPSSTGENASITFTAISALTSMSSNSVNFPNMAGSSQCSGGLTFGAGALQCTSVGR* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0429 213 Gene3D - 72 134 - -
Gso17g0429 213 ProSiteProfiles NF-YA/HAP2 family profile. 72 132 IPR001289 GO:0003700|GO:0006355
Gso17g0429 213 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 75 129 IPR001289 GO:0003700|GO:0006355
Gso17g0429 213 SMART cbf3 71 132 IPR001289 GO:0003700|GO:0006355
Gso17g0429 213 PRINTS CCAAT-binding transcription factor subunit B signature 75 97 IPR001289 GO:0003700|GO:0006355
Gso17g0429 213 PRINTS CCAAT-binding transcription factor subunit B signature 106 129 IPR001289 GO:0003700|GO:0006355
Gso17g0429 213 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 210 - -
Gso17g0429 213 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 210 IPR001289 GO:0003700|GO:0006355
Gso17g0429 213 ProSitePatterns NF-YA/HAP2 subunit signature. 77 97 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0429 Gso-Chr17 3903860 3908743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0429 25 138 CCAAT-HAP2 Transcription Factor Family AT1G17590 60.870 1.74e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso17g0429 CBFB_NFYA 2.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0429 K08064 - gmx:100777544 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0429 17 3903860 3908743 Gso17g0429 17 3903860 3908743 ECH
Gso13g0782 13 22162065 22166696 Gso17g0429 17 3903860 3908743 GST