Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0427 ATGCTTACGTGCATAGCTCGTCCAAAGAAACCTGATGAATCGGATCCGGACAACGCGACAAGCGCCGCTAAATCGCAAGCCATCAAATCCCTTACTTCTCAGATAAGGGATATGGCGTTGAAGGCCTCGGGAGCGTACAAGCATTGCGCACCGTGCACGGGGCCAGCGACGCAGGGGCGAGTTCGGAGCAACGCCACCGAGTTGGACGCGGATTCGGACCGGTTCCGGTGGTCGTACCGGAGAACGGGGAGCTCGAGCTCGACGACGACAAGGACGTGGGGGAAGGAGATGGAGGCGCGGCTGAAGGGGATTTCGAGCGGGGAGGGAACGCCGAACTCCGCCAGCGGACGGAGGGCGGAGCCGGTGGTGCTGTTCGTTGAAGAGAACGAGCCGAAGGAGTGGGTTGCGCAGGTGGAGCCTGGCGTTTTGATTACGTTCGTGTCGTTGCCACGTGGCGGGAACGATCTCAAGCGTATACGGTTCAGTCGAGAGATGTTCAATAAATGGCAAGCTCAAAGGTGGTGGGCAGAGAACTACGACAAGGTTATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTTCCTCTTCCAACGCCTCTAAGATCTGAAGATGAGAGCTCAAAGCTTGAATCAGTAGAAGAAAGCCCTGTAACACCTCCACTGAACAGTGAGCGGTTACCTCGTAATATGTACCGTCCAACAGGGATGGGAATGGGTTACTCATCCTCAGATTCCTTTGATCATCAGTCTATGCAATCTCGGCATTTCTATGACTCAAATGGTATGAACTCAACACCAAAAGTGTCCACCATTAGTGCGGCCAAGACAGAGATATCATCAATGGAGGCTTCTATCAGAAGTAGCTCATCCAGAGAGGCTGATCGCTCGGGTGATTTTTCAATCAGTAATGCTAGTGAATTGGAGACTGAATGGGTTGAACAGGATGAACCTGGGGTTTACATTACGATCAGAGCATTGCCAGGTGGTGCAAGAGAGCTCAAACGAGTCAGGTTCAGCCGAGAAAAGTTTGGGGAGATGCATGCTAGATTATGGTGGGAAGAGAACCGTGCCAGAATACATGAACAATACTTGTGA 1101 0.5195 MLTCIARPKKPDESDPDNATSAAKSQAIKSLTSQIRDMALKASGAYKHCAPCTGPATQGRVRSNATELDADSDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRAEPVVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNRQAFPLPTPLRSEDESSKLESVEESPVTPPLNSERLPRNMYRPTGMGMGYSSSDSFDHQSMQSRHFYDSNGMNSTPKVSTISAAKTEISSMEASIRSSSSREADRSGDFSISNASELETEWVEQDEPGVYITIRALPGGARELKRVRFSREKFGEMHARLWWEENRARIHEQYL* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0427 366 MobiDBLite consensus disorder prediction 199 230 - -
Gso17g0427 366 Pfam Transcription factor BRX N-terminal domain 20 52 IPR027988 -
Gso17g0427 366 ProSiteProfiles BRX domain profile. 132 187 IPR013591 -
Gso17g0427 366 ProSiteProfiles BRX domain profile. 311 366 IPR013591 -
Gso17g0427 366 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 366 IPR044532 -
Gso17g0427 366 MobiDBLite consensus disorder prediction 1 27 - -
Gso17g0427 366 Pfam Transcription factor regulating root and shoot growth via Pin3 132 186 IPR013591 -
Gso17g0427 366 Pfam Transcription factor regulating root and shoot growth via Pin3 310 365 IPR013591 -
Gso17g0427 366 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0427 Gso-Chr17 3883670 3889540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0427 1 366 Major Intrinsic Protein MIP AT1G31880 44.588 3.10e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0427 - - gmx:100777018 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0427 17 3883670 3889540 Gso17g0427 17 3883670 3889540 ECH
Gso13g0785 13 22187030 22192675 Gso17g0427 17 3883670 3889540 GST
Gso17g0427 17 3883670 3889540 Gso15g1429 15 15972246 15980143 PCT
Gso15g1429 15 15972246 15980143 Gso17g0427 17 3883670 3889540 PCT