Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0424 ATGGGTGATTTCCAAGGCCCCTTCATAGTGTCACCCCCTCCTTCACTCTCTTCCTCGGATAAATCCAGCACAACCATGCTATACTATGGGCTAGTAGTGGTGGGGATTGCAGCCATGGCATTAGCCCTATATAACTTCATCATCATCAAACGAAGTAGAAGGCGCCATATGCAATCACAGGCTGCAGGGGCAAATGGGTTGGTGGAGGGGGCGGTGATGGAAAGTAGTGGAACTGAGAACTGCCAAAGGAACAACTTCAACATGCTCTCAAGCTTCAAGTACAAGAAAGAAGGAATTGGAAATGATGGTGATTATGATTATGAATGCCCAGTTTGCTTATCGGGTTTTGAAGAAGGTGAAGAAGTGAGGAAGCTGCCACGGTGCAAGCACTGGTTCCACGCACCGTGCATAGACATGTGGCTCTACTCTCATCTCGATTGCCCAATTTGTCGAACACCTGTTGGGCAATTCTGTCACCGTTTCCATTCTGGTCTGGGGTTACTGGAATCCAGTGGTGGTGGTGGCGGTGGCGGTGGCGTCTCGGTAGTATGA 552 0.4946 MGDFQGPFIVSPPPSLSSSDKSSTTMLYYGLVVVGIAAMALALYNFIIIKRSRRRHMQSQAAGANGLVEGAVMESSGTENCQRNNFNMLSSFKYKKEGIGNDGDYDYECPVCLSGFEEGEEVRKLPRCKHWFHAPCIDMWLYSHLDCPICRTPVGQFCHRFHSGLGLLESSGGGGGGGGVSVV* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0424 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 155 IPR013083 -
Gso17g0424 183 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 157 - -
Gso17g0424 183 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 157 IPR044675 -
Gso17g0424 183 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Gso17g0424 183 SMART ring_2 109 150 IPR001841 -
Gso17g0424 183 Pfam Ring finger domain 108 151 IPR001841 -
Gso17g0424 183 SUPERFAMILY RING/U-box 103 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0424 Gso-Chr17 3868067 3868618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0424 31 154 C3H Transcription Factor Family AT5G17600 38.462 1.53e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0424 - - gmx:102668514 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0787 13 22212190 22212732 Gso17g0424 17 3868067 3868618 GST
Gso17g0424 17 3868067 3868618 Gso15g1431 15 16057419 16058195 PCT
Gso15g1431 15 16057419 16058195 Gso17g0424 17 3868067 3868618 PCT