Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0421 ATGGGGAGAAGCCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTGAGAGAATATATTAGAGTCCATGGTGAAGGAAGATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAAAGATGCGGGAAAAGTTGTAGACTTCGATGGTTGAATTATCTCAGACCAGATATTAAGAGAGGCAATATATCCCCAGATGAAGAAGAGCTCATCATCAGGCTCCACAAGCTCCTCGGAAACAGATGGTCTTTAATAGCTGGGAGGCTTCCAGGACGAACAGACAACGAAATAAAGAATTATTGGAACACCAATTTAGGGAAAAAGGTGAAAGATGGTCACCAAACAACCACTGGAAACAACACACAGAATCCAATGCCCAACCCATCACCCTCCCTATCTCCTCCTAAACTAGATTCCCATGTTGTCCGTACAAAGGCTACCAAGTGCTCCAAGTTGTTATTCCTAAACCCACCCCCTCACCCATCAATGCAGAACAAGTTCAAGACTGAGGCAGAAGAAGAAGAAGAAGAAGCAAGGCTTGTGAATGGTGTAATTAGAAACCAAATGGAACACACTACATACGACAACGGGTTCCTGTCGTTTCCGGATGAAGAAAAAGAACTCTCAACAGATTTGCTCATAGATTTCAACGTGGGGGATTTCTGCTTGTCTGATCTTCTCAACTCAGATTTCTCAAACTCGTACAATTTCAGCTGCAATATTAATAATGTTAACAACCACGAGCAGTTATCGCCTTGTTCGGACCAACCTGATCCTATGTTCTCTGATGAAGTTCTCAAGGACTGGACACACAACAATTTTGCAGACGAAGCGAATGCTTCCAACAATCTTCGTTCTTTCATTTCGTTCCTTGAGTCCACTGAGGAAAGATTAGGAGAATGA 924 0.4297 MGRSPCCSKEGLNRGAWTAHEDKILREYIRVHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISPDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDGHQTTTGNNTQNPMPNPSPSLSPPKLDSHVVRTKATKCSKLLFLNPPPHPSMQNKFKTEAEEEEEEARLVNGVIRNQMEHTTYDNGFLSFPDEEKELSTDLLIDFNVGDFCLSDLLNSDFSNSYNFSCNINNVNNHEQLSPCSDQPDPMFSDEVLKDWTHNNFADEANASNNLRSFISFLESTEERLGE* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0421 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso17g0421 307 PANTHER TRANSCRIPTION FACTOR TT2 1 263 - -
Gso17g0421 307 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 263 - -
Gso17g0421 307 CDD SANT 16 61 IPR001005 -
Gso17g0421 307 SMART sant 13 63 IPR001005 -
Gso17g0421 307 SMART sant 66 114 IPR001005 -
Gso17g0421 307 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gso17g0421 307 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso17g0421 307 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso17g0421 307 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso17g0421 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso17g0421 307 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso17g0421 307 CDD SANT 71 112 IPR001005 -
Gso17g0421 307 MobiDBLite consensus disorder prediction 114 145 - -
Gso17g0421 307 Gene3D - 70 134 - -
Gso17g0421 307 MobiDBLite consensus disorder prediction 114 133 - -
Gso17g0421 307 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0421 Gso-Chr17 3835676 3837337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0421 1 151 MYB Transcription Factor Family AT2G47460 59.477 2.77e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso17g0421 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0421 K09422 - gmx:100802704 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0421 17 3835676 3837337 Gso7g0333 7 3146102 3153978 ECH
Gso17g0421 17 3835676 3837337 Gso17g0421 17 3835676 3837337 ECH
Gso13g0791 13 22240886 22242588 Gso17g0421 17 3835676 3837337 GST