Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0418 ATGATGAATGGAAGGAACGTTGACACAAACAGGTTCCCCTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCCCTCATCTACAAATACATGGCTTCAGGTATTTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACAACCCACTTGGACTCCTCAAGACTCTTGCCTCAACACTTTGGGTGGAATTATTTGCCAATGGGATTGGGGAGAAAAATAGACCCAGAGCCAGGGAGGTGTAGAAGAACAGATGGGAAAAAATGGAGGTGCTCAAAGGAGGCGTATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAATGACAGCAGCAACAAACACAGATGCCTCAACCCCAACAACAATCTTATCAATCACCAAAAACAGTCCTGTACTCTTCCCAACCACTCATTCTCTGTCTCATGACACTTACCATCATCATCACCATCATCACTCTCACCCTCAGCAACATTCCTCCCACTCCTTCCTCTATCATTCTTCGAGGCCCTCTTCCGGTGGTGTTTCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCATGCTCTCAGAATAACAACAACACTGACTGCAGGTATGTGTATGGACTAAAAGAGGAGGTGGATGAGCATGCCTTTTTCACAGAACCTTCTGGAACTATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCACTGACTATAAGCTCCTCTTCCTCTTCAAAACAGAGGAGTTGCTCTGGTTTATCCAATGACAGCAATGAGTACTCCTACTTGCAACTTCAGAGCCTCAGTGGCAACAACTCAAAGCATCCACAGCAAGATCAAGGTTGCTACATATCAGGCAGTGATATCAAGTGCGAAACATTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTCGATGAATGGCCTCCCAAAAGCAGAGGATCATGGCTTGATTTGGATGATAAATCATCCACAACCCAGCTTTCAATTTCCATTCCCACTTCTACTCATGATTTTGCAACTTTCAGTTCAACAACCCAACGAGATGGTTGA 1134 0.4515 MMNGRNVDTNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTTHLDSSRLLPQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPMTAATNTDASTPTTILSITKNSPVLFPTTHSLSHDTYHHHHHHHSHPQQHSSHSFLYHSSRPSSGGVSLSFQDNSAPLFLDTASCSQNNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDSNEYSYLQLQSLSGNNSKHPQQDQGCYISGSDIKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSTHDFATFSSTTQRDG* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0418 377 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso17g0418 377 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso17g0418 377 MobiDBLite consensus disorder prediction 155 184 - -
Gso17g0418 377 MobiDBLite consensus disorder prediction 160 174 - -
Gso17g0418 377 PANTHER GROWTH-REGULATING FACTOR 5 3 353 - -
Gso17g0418 377 Pfam WRC 77 119 IPR014977 -
Gso17g0418 377 PANTHER - 3 353 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gso17g0418 377 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso17g0418 377 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0418 Gso-Chr17 3815837 3818482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0418 4 119 GRF Transcription Factor Family AT3G13960 67.500 7.99e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gso17g0418 WRC 8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0418 - - gmx:100807835 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0418 17 3815837 3818482 Gso17g0418 17 3815837 3818482 ECH
Gso13g0794 13 22266329 22269003 Gso17g0418 17 3815837 3818482 GST
Gso17g0418 17 3815837 3818482 Gso15g1461 15 16789373 16791828 PCT
Gso17g0418 17 3815837 3818482 Gso9g0579 9 6839345 6841746 PCT
Gso15g1461 15 16789373 16791828 Gso17g0418 17 3815837 3818482 PCT
Gso9g0579 9 6839345 6841746 Gso17g0418 17 3815837 3818482 PCT