Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0404 ATGGGATCAAGCTTCTCTAGTTGTTATGAGGGTGAATCTGTGTCTCCTTCTCCAAAGCCAACCAAAGTGGTGGCTACGAAGGGTGGTTCTTCTTCCAACAGGGTCTCTATAACGGACTTGAGTTTTCCTGGCTCAACGCTTTCGGAGGATCTCTCCGTTTCTCTAGTGGGGTCTAACCTGCATGTGTTTTCACTCGCTGAGCTCAAGATCATAACGCAGGGTTTCTCTTCGAGTAACTTTCTCGGAGAAGGAGGTTTCGGACCCGTGCATAAGGGCTTCATTGATGACAAGCTTAGGCCTGGTCTCGAGGCTCAACCGGTTGCCGTCAAGCTTTTGGACTTGGACGGTTCTCAGGGCCATAAAGAGTGGTTGACTGAAGTTGTGTTTCTGGGTCAACTAAGGCATCCACATCTCGTGAAGCTGATTGGATATTGCTGTGAAGAAGAACACAGGCTTCTGGTATATGAGTATTTACCACGAGGCAGCTTAGAGAATCAACTATTTAGAAGATATACGGCATCGTTACCATGGTCAACAAGAATGAAAATTGCAGCTGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCAAAGAAACCAGTCATCTATAGAGATTTTAAAGCTTCAAACATCTTGTTAGACTCGGATTATAATGCAAAACTTTCCGATTTTGGCTTGGCCAAAGATGGTCCTGAAGGAGATGACACACACGTTTCAACTAGAGTCATGGGCACACAAGGCTATGCGGCCCCAGAATACATCATGACAGGACACTTGACAGCAATGAGTGATGTGTACAGTTTTGGAGTCGTGCTCTTGGAGCTTCTAACAGGACGAAGGTCAGTGGACAAAGGGCGCCCACAGAGAGAACAGAACCTCGTGGAATGGGCCAGGTCTGCTTTGAATGATTCCCGGAAACTTAGCAGAATAATGGATCCAAGGCTTGAGGGTCAGTATTCTGAGGTTGGGGCAAGAAAAGCAGCTGCATTGGCTTACCAATGCCTTAGCCACAGGCCAAGGAGTAGACCCTTGATGAGCACTGTGGTTAATGTTCTCGAGCCACTTCAGGACTTTGATGATGTTCCAATTGGACCCTTTGTTTACACTGTTCCAGCTGAACAACAACAATACAATGAAGTCGCAAAAGAGAGTGAAACACCTAAGGAGAGGAAGAGGGAAAATGGTCATCATCATAACCGACGTCATCATCATCATCGCCACAATGGTCATAGGCATCATCCACTTAAATCTCCTAAGACACCAATGCCATCAGATCAGTCACAGAATGATGAACACCGAAATGGTAGAAAAAGTGGGTCTAATTCACCTGATACATTCAATGCATCAGAAGCTCAACGAAGCATGGGTTAG 1371 0.4602 MGSSFSSCYEGESVSPSPKPTKVVATKGGSSSNRVSITDLSFPGSTLSEDLSVSLVGSNLHVFSLAELKIITQGFSSSNFLGEGGFGPVHKGFIDDKLRPGLEAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRYTASLPWSTRMKIAAGAAKGLAFLHEAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKGRPQREQNLVEWARSALNDSRKLSRIMDPRLEGQYSEVGARKAAALAYQCLSHRPRSRPLMSTVVNVLEPLQDFDDVPIGPFVYTVPAEQQQYNEVAKESETPKERKRENGHHHNRRHHHHRHNGHRHHPLKSPKTPMPSDQSQNDEHRNGRKSGSNSPDTFNASEAQRSMG* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0404 456 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 21 409 - -
Gso17g0404 456 MobiDBLite consensus disorder prediction 374 456 - -
Gso17g0404 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Gso17g0404 456 PANTHER OS01G0588500 PROTEIN-RELATED 21 409 - -
Gso17g0404 456 MobiDBLite consensus disorder prediction 439 456 - -
Gso17g0404 456 Gene3D Transferase(Phosphotransferase) domain 1 158 361 - -
Gso17g0404 456 SUPERFAMILY Protein kinase-like (PK-like) 50 353 IPR011009 -
Gso17g0404 456 Pfam Protein tyrosine and serine/threonine kinase 79 351 IPR001245 GO:0004672|GO:0006468
Gso17g0404 456 MobiDBLite consensus disorder prediction 1 31 - -
Gso17g0404 456 Gene3D Phosphorylase Kinase; domain 1 44 157 - -
Gso17g0404 456 ProSiteProfiles Protein kinase domain profile. 75 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0404 456 CDD STKc_IRAK 81 355 - -
Gso17g0404 456 MobiDBLite consensus disorder prediction 393 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0404 Gso-Chr17 3716408 3718971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0404 61 392 Glycoside Hydrolase AT3G07070 50.448 2.25e-101 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso17g0404 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0404 - - gmx:100305397 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0404 17 3716408 3718971 Gso17g0404 17 3716408 3718971 ECH
Gso13g0806 13 22369947 22372448 Gso17g0404 17 3716408 3718971 GST
Gso17g0404 17 3716408 3718971 Gso15g1472 15 16983954 16987850 PCT
Gso17g0404 17 3716408 3718971 Gso9g0588 9 7003812 7007518 PCT
Gso15g1472 15 16983954 16987850 Gso17g0404 17 3716408 3718971 PCT
Gso9g0588 9 7003812 7007518 Gso17g0404 17 3716408 3718971 PCT