Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0396 ATGGCCGCTGTTCGCCTCCTTCTCTTCCACCTCCTCCTCCTCCTCCTCCTCTTCCCTTTCTCCTCTTTCTCCCTCTCCGAAAACGAAGCCCTTCTCAACCTCAAGAAATCATTCTCCAACCCCGTTGCTCTCTCTTCCTGGGTCCCCAACCAGAGCCCTTGCTCCTCCCGGTGGCTCGGCGTCATCTGCTTCAACAACATCGTCAGCAGCCTCCACCTCGCCGACCTCTCCCTCTCCGGCACCATCGACGTCGACGCCCTCACCCAAATCCCCACTCTCCGTTCAATCAGCTTCATCAACAACTCCTTCTCCGGCCCGATCCCTCCCTTCAACAAACTCGGAGCCCTCAAGGCCCTCTACTTAGCCCGCAACCATTTCTCCGGCCAAATCCCCTCCGATTTCTTCTCCCAATTAGCTTCCCTGAAAAAAATATGGATCTCCGACAACAATTTCTCCGGCCCCATCCCCTCTTCCTTAACCAACCTCCGCTTCCTCACCGAACTCCACCTCGAGAACAACCAGTTCTCTGGCCCGGTCCCGGAGCTCAAGCAAGGCATAAAATCCTTGGACATGTCGAACAACAAGCTCCAGGGAGAAATCCCCGCCGCCATGTCGCGGTTCGACGCGAATTCCTTCTCCAACAACGAAGGGCTCTGCGGGAAGCCTTTGATTAAAGAGTGTGAGGCCGGTAGTTCAGAAGGGTCGGGTTGGGGGATGAAGATGGTTATTATCCTCATTGCCGCTGTTGCTTTGGCGATGATTTTTGTGTTGATGCGGTCGAAGCGTCGACGCGACGATGACTTCAGCGTGATGAGCAGGGATCACGTGGACGAGGTGGTGCAAGTGCACGTGCCGAGCTCGAACCATAGCAGGGCCTCCGAGAGGGGGAGCAAGAAGGAGTTTACTTCGTCGAAGAAAGGGTCGTCGCGTGGCGGCATGGGTGACCTTGTGATGGTGAACGACGAGAAGGGCGTGTTTGGGTTGCCCGATTTGATGAAGGCTGCCGCGGAGGTTCTCGGGAACGGTGGGTTGGGTTCGGCCTACAAAGCTGCCATGAACAATGGCCTCTCTGTGGTGGTCAAGAGGATGCGCGAGATGAATAAAGTCAGCAGAGACATCTTTGACGCCGAGATGAGACGCTTTGGAAGACTCAGAAACCCTAACATCATTACGCCTCTCGCTTACCATTACCGCAAGGAGGAAAAGCTGTTTGTCACTGAATACATGCCCAAAGGAAGCTTGCTATACGTCTTGCATGGTGACAGAGGATCGAGTCATGCCGACCTGAACTGGCCAATGCGTTTGAATATCGTGAAGGGAATTGCACGAGGGTTGGGTTTTATTTATTCTGAATTTCCTAACGAAGTGCTGCCACATGGAAACCTGAAATCCAGTAATGTTCTACTAACTGAAAATTACGAGCCTCTCCTAAGCGACTTCGCCTTTCATCCACTCATCAACCCCAACTACGCCATACAGACAATGTTTGCCTACAAAACACCCGATTACGTGTCATACCAGCATGTTTCACAGAAGACCGACGTGTATTGCCTCGGAATCATCGTTCTTGAAATCATCACTGGGAAATTCCCCTCTCAGTATCACAGTAATGGCAAGGGTGGGACTGACGTAGTGCACTGGGTGTTCACTGCCATTTCTGAGAGAAGAGAAGCGGAATTGATTGATCCAGAGTTGATGAGCAATCACTCCAACTCCCTCAATCAAATGCTGCAACTTCTCCAAGTAGGGGCTGCTTGCACGGAGAGCAACCCCGACCAACGACTTAACATGAAGGAAGCCATTAGAAGGATAGAGGAGGTTCAGGTTTAA 1830 0.524 MAAVRLLLFHLLLLLLLFPFSSFSLSENEALLNLKKSFSNPVALSSWVPNQSPCSSRWLGVICFNNIVSSLHLADLSLSGTIDVDALTQIPTLRSISFINNSFSGPIPPFNKLGALKALYLARNHFSGQIPSDFFSQLASLKKIWISDNNFSGPIPSSLTNLRFLTELHLENNQFSGPVPELKQGIKSLDMSNNKLQGEIPAAMSRFDANSFSNNEGLCGKPLIKECEAGSSEGSGWGMKMVIILIAAVALAMIFVLMRSKRRRDDDFSVMSRDHVDEVVQVHVPSSNHSRASERGSKKEFTSSKKGSSRGGMGDLVMVNDEKGVFGLPDLMKAAAEVLGNGGLGSAYKAAMNNGLSVVVKRMREMNKVSRDIFDAEMRRFGRLRNPNIITPLAYHYRKEEKLFVTEYMPKGSLLYVLHGDRGSSHADLNWPMRLNIVKGIARGLGFIYSEFPNEVLPHGNLKSSNVLLTENYEPLLSDFAFHPLINPNYAIQTMFAYKTPDYVSYQHVSQKTDVYCLGIIVLEIITGKFPSQYHSNGKGGTDVVHWVFTAISERREAELIDPELMSNHSNSLNQMLQLLQVGAACTESNPDQRLNMKEAIRRIEEVQV* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0396 609 Gene3D Phosphorylase Kinase; domain 1 339 409 - -
Gso17g0396 609 Pfam Protein kinase domain 337 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0396 609 SUPERFAMILY L domain-like 24 207 - -
Gso17g0396 609 Gene3D Ribonuclease Inhibitor 186 224 IPR032675 -
Gso17g0396 609 Gene3D Ribonuclease Inhibitor 135 184 IPR032675 -
Gso17g0396 609 Gene3D Ribonuclease Inhibitor 26 134 IPR032675 -
Gso17g0396 609 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Gso17g0396 609 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Gso17g0396 609 SUPERFAMILY Protein kinase-like (PK-like) 337 604 IPR011009 -
Gso17g0396 609 Coils Coil 597 609 - -
Gso17g0396 609 MobiDBLite consensus disorder prediction 284 313 - -
Gso17g0396 609 PANTHER LRR RECEPTOR-LIKE KINASE 10 609 - -
Gso17g0396 609 Gene3D Transferase(Phosphotransferase) domain 1 410 609 - -
Gso17g0396 609 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 609 - -
Gso17g0396 609 ProSiteProfiles Protein kinase domain profile. 333 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0396 Gso-Chr17 3636794 3640210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0396 1 609 Receptor kinase-like Gene Family AT3G42880 51.962 0.0 631
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso17g0396 Pkinase 1.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0396 - - gmx:100816925 1159.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0396 17 3636794 3640210 Gso17g0396 17 3636794 3640210 ECH
Gso13g0816 13 22461750 22464963 Gso17g0396 17 3636794 3640210 GST
Gso17g0396 17 3636794 3640210 Gso15g1482 15 17247163 17250637 PCT
Gso15g1482 15 17247163 17250637 Gso17g0396 17 3636794 3640210 PCT