Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0394 ATGTCCAGCTCATCGGAATATTCGGCATTTTCCGGCCCCCGCCCGGCCAAGTCGCCGGCCGAGAAGTCCACTTTCTCTCAGACTTGTAGTCTATTGAGCCAATACATCAAGGAAAAAGGTGCCTTCGGAGACCTTACCCTCGGGATGACTCGCACCCCCGATACTTACGGTTCCCCTGAGACATCGTGTCACTCTGCAACAACCATGGAGTTGTTTCCCACCATCATCAAGCAACGGAACCCAACTACTGTGGATTTCCTATCTCCCCAGAGTGCTTATCCTCACCACTCAGAGGTTCCAACCATGGTCAAATCAAGTGCATTTAAGTCTATAGAGAAGGAGCCTAAAGCTGCTCAGTTGACAATCTTTTATGCTGGGCAAGTTGTTGTGTTTGATGATTTTCCTGCTGAAAAATTGGAGGAGATAATGTCATTAGCCGGCAAGGGAATATCCCAAAGCCAAAACACCTCTGCATGTGCTCACACTCATAACCAGCAAGGGAATCATCCTTCCTTTGTTCCTAATGTCTCCCCTCAAGCACCGTCCAGACCAATTGTTTGTGAACTGCCAATTGCTAGGAAAGTTTCACTTCATCGGTTCCTTTCTAAGAGAAAAGATAGAATTGCTTCCAAAGCACCATATCAAATAAACAATCCCAACTCTGCTTCAAATAAGCCGGCTGAATCCATGACATGGCTAGGATTAGGTGCTCAATCAACACAATTCTGA 729 0.465 MSSSSEYSAFSGPRPAKSPAEKSTFSQTCSLLSQYIKEKGAFGDLTLGMTRTPDTYGSPETSCHSATTMELFPTIIKQRNPTTVDFLSPQSAYPHHSEVPTMVKSSAFKSIEKEPKAAQLTIFYAGQVVVFDDFPAEKLEEIMSLAGKGISQSQNTSACAHTHNQQGNHPSFVPNVSPQAPSRPIVCELPIARKVSLHRFLSKRKDRIASKAPYQINNPNSASNKPAESMTWLGLGAQSTQF* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0394 242 SMART tify_2 113 148 IPR010399 -
Gso17g0394 242 ProSiteProfiles Tify domain profile. 113 148 IPR010399 -
Gso17g0394 242 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 236 IPR040390 -
Gso17g0394 242 Pfam Jas motif 190 215 IPR018467 -
Gso17g0394 242 Pfam tify domain 114 147 IPR010399 -
Gso17g0394 242 MobiDBLite consensus disorder prediction 1 23 - -
Gso17g0394 242 PANTHER PROTEIN TIFY 10A 20 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0394 Gso-Chr17 3619996 3622297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0394 1 238 Tify Gene Family AT1G19180 42.412 5.03e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gso17g0394 tify 6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0394 K13464 - gmx:100527510 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0394 17 3619996 3622297 Gso17g0394 17 3619996 3622297 ECH
Gso13g0818 13 22492284 22494651 Gso17g0394 17 3619996 3622297 GST
Gso17g0394 17 3619996 3622297 Gso15g1487 15 17346605 17349223 PCT
Gso17g0394 17 3619996 3622297 Gso9g0604 9 7245028 7247729 PCT
Gso15g1487 15 17346605 17349223 Gso17g0394 17 3619996 3622297 PCT
Gso9g0604 9 7245028 7247729 Gso17g0394 17 3619996 3622297 PCT