Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0390 ATGGCGAAACCCAGCAGCGAAAAGCCAGAGGAGCATAGCGATTCCAAGTACTACAAAGGGGTCCGAAAGAGAAAATGGGGCAAATGGGTATCCGAAATAAGACTACCCAACAGCCGTCAGAGGATTTGGTTGGGATCCTACGACACCCCCGAGAAGGCCGCGCGTGCCTTCGACGCGGCAATGTTCTGCTTACGTGGCCGCAACGCCAAGTTTAATTTCCCCGACAACCCACCCGACATCGCCGGCGGAACGTCCATGACGCCGTCGCAGATTCAGATCGCCGCCGCACAATTCGCCAACGCGGGGCCCCACGAGGGACATTCGGGTCGACCCGAACATCCTCCCATGGAATCTCCATCGCCTTCTGTTTCGGAAGGGACCATCCAAACGGACAGTGACGTCCCCACTCTTAACGGTTCAGTAACGGATTTGTTCACGCCCGTTGGGTCGAGTGGTTACGCATCCGATTACGGGATTTTCCCGGGCTTTGATGATTTCAGTGGCGATTTTTATGTGCCGGAAATGCCGAACGTTAATTATGGAGAAGAAAACGGGGAAGGGTTCATAGTTGATGAATCTTTCTTGTGGAATTTTTGA 597 0.536 MAKPSSEKPEEHSDSKYYKGVRKRKWGKWVSEIRLPNSRQRIWLGSYDTPEKAARAFDAAMFCLRGRNAKFNFPDNPPDIAGGTSMTPSQIQIAAAQFANAGPHEGHSGRPEHPPMESPSPSVSEGTIQTDSDVPTLNGSVTDLFTPVGSSGYASDYGIFPGFDDFSGDFYVPEMPNVNYGEENGEGFIVDESFLWNF* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0390 198 MobiDBLite consensus disorder prediction 100 131 - -
Gso17g0390 198 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Gso17g0390 198 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Gso17g0390 198 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Gso17g0390 198 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Gso17g0390 198 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Gso17g0390 198 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
Gso17g0390 198 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Gso17g0390 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017-LIKE 7 198 - -
Gso17g0390 198 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Gso17g0390 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0390 Gso-Chr17 3582516 3583674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0390 18 198 AP2-EREBP Transcription Factor Family AT1G19210 53.763 6.59e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso17g0390 AP2 3.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0390 - - gmx:732656 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0390 17 3582516 3583674 Gso17g0390 17 3582516 3583674 ECH