Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0389 ATGGCAACCTCTCAAATCACTGCATCATTGAGGAACTTGCCTGCATTTGAAAGGTTTCAACCTTCAGCGCTTCGATTTTCTTCTGCTGGGCACGTCAGAATTGGAACACTCACGCAACCCTCGTTTCCCTCTTTCGTTGTCAAAGCCGCCACTGTTGTTGCCCCCAAGCACACCACTGTTAAGCCTCTGGGTGATAGAGTACTGGTGAAAATTAAGGATGCAGAGGAGAAGACTGCAGGTGGGATTTTACTGCCAGCAAATGCTCAAGGCAAGCCTCAAGGGGGTGAAGTGGTTGCTGTTGGAGAAGGGAAGTCGGTTGGGAAGTGCAAAGTGGATGTTAGTGTGAAGACAGGTGCACAAGTTGTGCATTCAAAGTATGCAGGGACTGAGGTAGAGTTCAATGGTTCAAAACATCTTATTCTGAAGGACGATGACATTGTTGGTATCCTTGAAACTGATGAGGTCAAGGATCTTGAACCCTTGAACGATAGAGTCTTGATAAAGGTTGCAGAAGCTGAGGAAAAAACTGCTGGAGGTTTGTTGCTCACAGAGGCAACCAAGGAGAAACCATCTATTGGAACAGTGATAGCAGTTGGTCCGGGGCCTCTGGATGAGGAAGGTAACAGAAAGCCATTGTCCGTCATGCCTGGGAATACAGTTCTGTACTCCAGATATGCAGGGAATGACTTCAAGGGCAAAGATGGTTCTGACTACATTGCCTTGAGGGCCTCAGATGTCATGGCTATCCTGTCCTAG 756 0.4762 MATSQITASLRNLPAFERFQPSALRFSSAGHVRIGTLTQPSFPSFVVKAATVVAPKHTTVKPLGDRVLVKIKDAEEKTAGGILLPANAQGKPQGGEVVAVGEGKSVGKCKVDVSVKTGAQVVHSKYAGTEVEFNGSKHLILKDDDIVGILETDEVKDLEPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKPLSVMPGNTVLYSRYAGNDFKGKDGSDYIALRASDVMAILS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0389 251 Hamap Co-chaperonin GroES [groES]. 157 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso17g0389 251 CDD cpn10 158 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso17g0389 251 SUPERFAMILY GroES-like 58 151 IPR011032 -
Gso17g0389 251 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso17g0389 251 ProSitePatterns Chaperonins cpn10 signature. 158 182 IPR018369 GO:0005524|GO:0006457
Gso17g0389 251 Hamap Co-chaperonin GroES [groES]. 59 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso17g0389 251 ProSitePatterns Chaperonins cpn10 signature. 60 84 IPR018369 GO:0005524|GO:0006457
Gso17g0389 251 PRINTS 10kDa chaperonin signature 60 75 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso17g0389 251 PRINTS 10kDa chaperonin signature 82 103 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso17g0389 251 PRINTS 10kDa chaperonin signature 116 128 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso17g0389 251 PRINTS 10kDa chaperonin signature 137 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso17g0389 251 CDD cpn10 59 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso17g0389 251 Gene3D GroES chaperonin 53 152 IPR037124 GO:0006457
Gso17g0389 251 Gene3D GroES chaperonin 153 251 IPR037124 GO:0006457
Gso17g0389 251 PANTHER GROES CHAPERONIN 1 251 - -
Gso17g0389 251 PIRSF Cpn21 1 251 IPR017416 GO:0006457|GO:0046914|GO:1901671
Gso17g0389 251 SMART Cpn10_2 157 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso17g0389 251 SMART Cpn10_2 59 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso17g0389 251 Pfam Chaperonin 10 Kd subunit 158 249 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso17g0389 251 Pfam Chaperonin 10 Kd subunit 60 149 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso17g0389 251 SUPERFAMILY GroES-like 157 250 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0389 Gso-Chr17 3573701 3575996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0389 1 251 Calmodulin-binding Proteins AT5G20720 71.875 3.82e-129 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0389 K04078 - gmx:100804915 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0389 17 3573701 3575996 Gso17g0389 17 3573701 3575996 ECH
Gso13g0823 13 22533571 22535960 Gso17g0389 17 3573701 3575996 GST
Gso17g0389 17 3573701 3575996 Gso15g1491 15 17504536 17508037 PCT
Gso17g0389 17 3573701 3575996 Gso9g0609 9 7341606 7345097 PCT
Gso15g1491 15 17504536 17508037 Gso17g0389 17 3573701 3575996 PCT
Gso9g0609 9 7341606 7345097 Gso17g0389 17 3573701 3575996 PCT