Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0388 ATGAAGGCTCCATCCAACGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACTATGAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCCCAAGGACACAGTGAACAAGTTGCAGCTTCCATGCAAAAGGAGGCTGACTTCATACCAAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCGTTGCATGCTGATCCTGAGACTGACGAGGTGTATGCACAGATGACCCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATACTGGCATCAGACATCGGTCTCAAACAAAACCGTCAACCCACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACTAGCACTCATGGTGGATTTTCTGTGCCGCGTAGAGCAGCTGAGAAAATATTACCACCTTTGGATTATTCAATGCAACCTCCAGCTCAGGAGCTTGTAGCCAAGGATTTGCACGACAATACATGGGCATTTAGACATATTTATCGGGGACAACCAAAGAGGCATCTATTGACTACTGGATGGAGTGTATTTGTCAGCACTAAAAGACTGTTTGCCGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCATCTTCTTTTAGGTATAAGACGTGCTAATAGACAGCAACCAGCACTCTCTTCGTCGGTGATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCTGCTCATGCTGCTGCAAATAATAGCCCATTCACTATATTTTACAATCCAAGGGCTAGCCCCTCTGAATTTGTTGTTCCGTTAGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAGTCTGGAGTGCGTGGGTATATGGGGACAATCACTGGTATCAGTGACTTGGATCCTGTCCGTTGGAAAAGCTCACAGTGGCGCAATATTCAGGTTGGATGGGATGAATCAACAGCTGGTGAACGCCCCAGAAGAGTTTCAATCTGGGAAATTGAACCAGTGGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTCAGGCCAAAGTTCCCCCGGCAACCAGGAATGCCAGATGATGAGTCAGATATGGAAAATGCTTTCAAGAGAGCTGTGCCTTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAATCTTTCCTGGTTTCAGTTTAATGCAGTGGATGAGCATGCAGCAGAATAACCAGCTCTCTGCTGCTCAATCAGGATGTTTCCCATCCATGCTTTCATCTAATACCCTTCAGGGTAACCTTAGCACTGATGACCCTTCCAAGTTATTGAGCTTTCAAGCTCCTGTCCTCTCTACCCCAAGTCTTCAATTAAACAAACCTAATCTACCAAATCAAATCAACCAGTTGCAACAGTCCCCAGTGTCATGGCCTCAGCAGCAACAGTTGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAACAACAGCAGCAACAACAACAACAACAGCAACAACAGCAGCAGCTGCAGTCATTGTTGCAAATACCAATGAACCAGCTCCAGCAGCAGAGGCAACAGCAGCTGCCTGAACCACAAAATCTGCCATTGTTGCAGCAACTGCCTCAGCATCTAGGACAGCAACCTCAGAAACAACAACAGTCAAGTCAACATGCTACTATTATGAATAATGGGGTAGTTGCCTCTAACCAAATTACAAATCAGTTTGCACAACAACCAATGGCATATGGTCAGCTTCAGCAACAACAGTTACTTTCAGGAGGTATCCAACCCCAGCAAGGTATCCAGTCAGCCACTAAGAATACATTCCCATTGACATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGACCAGCAAGCTAGCCTCTTACAGAGACAGCAGCAGCAACAACAGACACAATTGCAACAATCTCCACTGCAGTTGTTGCAGCAAAACCTGCCACAGAGAGCACTACAACAACCGCCAGCCACTCAAATGTTACAGCAAAATCCCTCAGAGCAACAACTCCACCTACAATTGCTACAGAAATTGCAGCAGCAGCAGCAACAACAACTTCTTTCCACGTCCACCCCACTTTTGCAGTCTCAGCTTCTACAACAACAAAATACTCACCAACAAAACCAGCAATCACTGCAGCCCCTGCCGCCTATATCTCAGCATCAGCCTCAACAACTTGGCAATAATGCATTCTCAACAGAGAAGCTTCTCAGCAGCAACAACTTCTCTTCATCTCTTACGCAATCGCAACAGCTTTCAATGAACCAGCCCCAGAATACACAGAAATCACATACCATCACTAGAGCCCCCTCTACACTAACTGATGGAGATGCCCCATCATGCTCAACCTCTCCATCTACTAACAACTGCCAGGTGTCTCCTCCGAACCTCCTGAAAAGAAATCAGCAAATACCAGCCACATTAGGGGGGGGTTTGATAGTTGAGCCCACTAGTAATCTGATACAGGAGCTTCACAGTAAGCCTGACACACAGATCAAACAGGAGTTGCTCAATGTAAAAGGACCTGACCAGTTGAAGTATAAAGGGACAATTACTGATCCGCTGGAAGCTTCTTCTTCCGGAACATCTTACTGTCTTGATCCTGGTAATGTCCAGCAGAACTTGCCACTTTCCAACTTCTGCATGGAAAGGGATGTCCAATCACACCCAAGAAACAGTTTGCCATTTGACTCTAATCTGGATGGTCTAACCCCTGATACTATGCTTCTAAGGGGGTATGACTCCCAAAAAGATCTTCAAAATTTGTTGTCTAACTATGCTAGTGCTCCAAGGGACATTGAAACTGAGCTGTCAACCGCTGATATCAGCTCACAGTCGTTTGGAGTGCCAAACATGCCTTTCAAGCCAGGTTGCTCAAGTGATGTTGGCATCAATGATACTGGGGTTTTAAATAATAATAATGGTTTGCGGACCAACCAAACTCCACGAATGCGAACATATACCAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTTACCCGTTACAAGGGATATGACGAACTCCGGCATGATTTGGCTAGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCTAAGGACTGATTGGAAATTAGTATACGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGATGAATTTGTCAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTTCCAATCCCCAATCAAGCTTGCAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAGTATGAAGATAACTCAGCTGCCTCCTTTAATAGGTAA 3414 0.4505 MKAPSNGYLPNSGEGERKTMNSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDIGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKILPPLDYSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQHLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRGYMGTITGISDLDPVRWKSSQWRNIQVGWDESTAGERPRRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDMENAFKRAVPWLGDDFGMKDASSSIFPGFSLMQWMSMQQNNQLSAAQSGCFPSMLSSNTLQGNLSTDDPSKLLSFQAPVLSTPSLQLNKPNLPNQINQLQQSPVSWPQQQQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQSLLQIPMNQLQQQRQQQLPEPQNLPLLQQLPQHLGQQPQKQQQSSQHATIMNNGVVASNQITNQFAQQPMAYGQLQQQQLLSGGIQPQQGIQSATKNTFPLTSLPQDSQFQQQIDQQASLLQRQQQQQQTQLQQSPLQLLQQNLPQRALQQPPATQMLQQNPSEQQLHLQLLQKLQQQQQQQLLSTSTPLLQSQLLQQQNTHQQNQQSLQPLPPISQHQPQQLGNNAFSTEKLLSSNNFSSSLTQSQQLSMNQPQNTQKSHTITRAPSTLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQIPATLGGGLIVEPTSNLIQELHSKPDTQIKQELLNVKGPDQLKYKGTITDPLEASSSGTSYCLDPGNVQQNLPLSNFCMERDVQSHPRNSLPFDSNLDGLTPDTMLLRGYDSQKDLQNLLSNYASAPRDIETELSTADISSQSFGVPNMPFKPGCSSDVGINDTGVLNNNNGLRTNQTPRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGGNVPIPNQACSGTDSGNAWRGQYEDNSAASFNR* 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0388 1137 Pfam AUX/IAA family 1006 1095 IPR033389 -
Gso17g0388 1137 CDD B3_DNA 125 226 IPR003340 GO:0003677
Gso17g0388 1137 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso17g0388 1137 Gene3D - 1005 1098 - -
Gso17g0388 1137 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Gso17g0388 1137 Gene3D - 289 360 - -
Gso17g0388 1137 MobiDBLite consensus disorder prediction 723 749 - -
Gso17g0388 1137 SMART B3_2 126 228 IPR003340 GO:0003677
Gso17g0388 1137 ProSiteProfiles PB1 domain profile. 1009 1102 IPR000270 GO:0005515
Gso17g0388 1137 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1125 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso17g0388 1137 MobiDBLite consensus disorder prediction 767 820 - -
Gso17g0388 1137 Coils Coil 494 532 - -
Gso17g0388 1137 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Gso17g0388 1137 PANTHER AUXIN RESPONSE FACTOR 19 1 1125 - -
Gso17g0388 1137 MobiDBLite consensus disorder prediction 1114 1137 - -
Gso17g0388 1137 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Gso17g0388 1137 SUPERFAMILY CAD & PB1 domains 1022 1087 - -
Gso17g0388 1137 Gene3D - 124 227 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0388 Gso-Chr17 3565215 3573241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0388 1 490 B3 DNA Binding Superfamily AT5G20730 79.559 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso17g0388 AUX_IAA 7e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0388 - K14486 gmx:100816054 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0388 17 3565215 3573241 Gso17g0388 17 3565215 3573241 ECH
Gso13g0824 13 22536567 22544034 Gso17g0388 17 3565215 3573241 GST
Gso17g0388 17 3565215 3573241 Gso15g1492 15 17533345 17541419 PCT
Gso17g0388 17 3565215 3573241 Gso9g0610 9 7356063 7364079 PCT
Gso15g1492 15 17533345 17541419 Gso17g0388 17 3565215 3573241 PCT
Gso9g0610 9 7356063 7364079 Gso17g0388 17 3565215 3573241 PCT