Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0368 ATGGCTATTCCTTCACTAATAAACCAGCCACAAAGAACACCCTCTCTCACATTCTCCTTCCTCCTCTTTCTCGCTATCTGCACCCCATTGGATGCTGCTCACACCGACTTCGCAGGTTCAGCCTGCCTCAAAGTTTCCCCTAGCCACTTCGCCGGCTCAGTCACCGAAGTCATCACTGCCATACGTCAACTCGCTTCGATCCTCTCACGCTTCGGCTCTCCCTTGGCCAACTTCCGCCTCAGCACCGCCATCGCCGACTGCCTGGACTTGCTCGACCTCTCCTCCGACGTCCTCTCCTGGGCCCTCTCGGCCTCTCAGAACCCCAAAGGGAAGCATAACAGTACGGGGAACCTGAGTTCGGATTTGAGGACATGGCTAAGTGCGGCGCTTGCGCATCCAGAGACGTGCATGGAGGGATTCGAAGGGACAAACAGCATTGTGAAGGGTTTGGTCTCGGCAGGCATCGGGCAAGTTGTGTCGTTGGTGGAGCAGCTTCTTGCGCAAGTTCTTCCCGCACAGGATCAATTTGACGCCGCCAGCAGCAAGGGGCAATTTCCTTCTTGGATTAAGCCCAAGGAAAGGAAGCTGCTGCAAGCAATTGCAGTCACTCCTGATGTCACTGTAGCTTTAGATGGGAGTGGGAACTACGCTAAGATCATGGATGCGGTGCTTGCGGCTCCTGATTATAGCATGAAGCGTTTTGTGATTTTGGTAAAGAAGGGTGTTTATGTTGAGAACGTGGAGATCAAGAAGAAGAAGTGGAATATTATGATTCTTGGACAGGGGATGGATGCCACCGTCATCTCCGGTAACCGGAGTGTCGTCGACGGCTGGACCACCTTCCGCTCAGCTACATTCGCTGTGAGTGGCAGAGGGTTCATAGCAAGAGACATATCCTTTCAGAACACAGCAGGGCCCGAGAAGCACCAAGCAGTGGCACTAAGATCAGACTCTGACCTTTCCGTGTTCTTCCGATGTGGGATTTTCGGTTACCAAGACAGTCTCTACACCCACACAATGCGCCAATTCTTCAGAGACTGCACAATCAGCGGCACAGTTGATTACATCTTCGGTGACGCCACTGCAGTGTTCCAAAACTGCTTCCTAAGAGTAAAAAAAGGCTTACCAAACCAAAAGAACACAATCACAGCACACGGTAGAAAAGACCCAAATGAACCAACCGGTTTCTCATTCCAGTTCTGCAACATAACTGCAGATTCTGATCTTATACCTTCTGTTGGAACCGCACAAACGTACCTGGGGAGACCCTGGAAGAGTTACTCACGAACCGTTTTCATGCAATCGTACATGAGTGAGGTGATAGGGGCAGAAGGGTGGTTGGAGTGGAATGGAAACTTTGCATTGGACACATTGTACTATGCTGAGTACATGAACACTGGAGCAGGTGCTGGAGTTGCTAACCGTGTGAAGTGGCCAGGGTACCATGCATTGAATGATTCGAGCCAGGCTAGTAACTTCACCGTGTCTCAATTTATTGAGGGGAATCTATGGTTGCCTTCAACTGGAGTAACCTTCACTGCGGGACTCACAGTTTAA 1557 0.5087 MAIPSLINQPQRTPSLTFSFLLFLAICTPLDAAHTDFAGSACLKVSPSHFAGSVTEVITAIRQLASILSRFGSPLANFRLSTAIADCLDLLDLSSDVLSWALSASQNPKGKHNSTGNLSSDLRTWLSAALAHPETCMEGFEGTNSIVKGLVSAGIGQVVSLVEQLLAQVLPAQDQFDAASSKGQFPSWIKPKERKLLQAIAVTPDVTVALDGSGNYAKIMDAVLAAPDYSMKRFVILVKKGVYVENVEIKKKKWNIMILGQGMDATVISGNRSVVDGWTTFRSATFAVSGRGFIARDISFQNTAGPEKHQAVALRSDSDLSVFFRCGIFGYQDSLYTHTMRQFFRDCTISGTVDYIFGDATAVFQNCFLRVKKGLPNQKNTITAHGRKDPNEPTGFSFQFCNITADSDLIPSVGTAQTYLGRPWKSYSRTVFMQSYMSEVIGAEGWLEWNGNFALDTLYYAEYMNTGAGAGVANRVKWPGYHALNDSSQASNFTVSQFIEGNLWLPSTGVTFTAGLTV* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0368 518 Gene3D - 199 516 IPR012334 -
Gso17g0368 518 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 45 516 - -
Gso17g0368 518 CDD PMEI-like_4 15 169 - -
Gso17g0368 518 PANTHER PECTINESTERASE 45 516 - -
Gso17g0368 518 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Gso17g0368 518 SMART PMEI_2 33 168 IPR006501 GO:0004857
Gso17g0368 518 SUPERFAMILY Pectin lyase-like 200 515 IPR011050 -
Gso17g0368 518 Pfam Plant invertase/pectin methylesterase inhibitor 55 152 IPR006501 GO:0004857
Gso17g0368 518 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 170 IPR035513 -
Gso17g0368 518 Pfam Pectinesterase 205 502 IPR000070 GO:0030599|GO:0042545
Gso17g0368 518 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 163 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0368 Gso-Chr17 3316774 3320393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0368 11 516 Carbohydrate Esterase AT3G43270 62.115 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0368 K01051 - gmx:100814987 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0850 13 22823978 22828350 Gso17g0368 17 3316774 3320393 GST
Gso17g0368 17 3316774 3320393 Gso15g1524 15 18412329 18415608 PCT
Gso17g0368 17 3316774 3320393 Gso9g0646 9 8240161 8243274 PCT
Gso15g1524 15 18412329 18415608 Gso17g0368 17 3316774 3320393 PCT
Gso9g0646 9 8240161 8243274 Gso17g0368 17 3316774 3320393 PCT