Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0348 ATGGAGGGCAAAGTTGCATTGAAAAAATTGCTGGAAGTTCAGAAAAAGGCACATGTTAATAGTACAGATGCACTCAACTGGACTGAGGAACCGTCCATTAAAAATACTCTAGGATCTACTCTTCTCAGTTTGAGTCTGAATAACTTGGAGCCTCCACAAAATCATGAGCAACAGCACCTGAACCAATTGGGCTTGCTGCAAATTGAGCTAGAGGAAGTGAAGAAGGAGAATCAGAATTTAAGGTCCATGCTAAATAAGATCTCTGAACACTACGCTGCTCTTCAGAATCAGTTATTGTCGGCGATGCAGCAGAAGAAACTATCTTCATCACCTCGAAATAATGAGGACATGCAGAGGGACAGCAGGCAAGAAGACATGGAGAAACCAGTGTTATCCTCCTGCAGCCAGTTCTTAAATACTGGTAAATTCAATAAACAAGTAACAACATCACAAGAAGCAAAAACCATAGAAGAGCAAGCATTTGAGGCTTCTTGCAAGAAAGCTAGAGTGTCCGTAAGAGCACGATCAGAATCATCTTTGATGGGTGATGGGTGCCAATGGAGAAAATATGGACAAAAGATATCAAAGGGCAATCCTTGCCCTCGGGCCTACTATCGCTGCAACATGGGAACAGCTTGTCCGGTTCGCAAGCAGGTTCAAAGGTGTTCTGAGGATGAGAGTGTTGTCATCACAACCTATGAGGGGAATCATAATCATTCACTCCCACCAGCAGCCAAGTCCATGGCAAGCACAACATCAGCAGCACTGAAAATGTTCCTTTCCGGCTCAACCTCTAGTTCACACGGAAGCACTTATTCTTATTCAAATTCAGACCTCTTCTCTCCACTATTCACCTCTACCTACTATCCATCTGCATCATCATCATGTCCAACTATAAATTTGGACTTTACCCAAACCTCTAAGGACAACCTGAAATTTCCAAGTGTTATTTCTTCAAACCATTTGCAACCTTTTCCTCTTTCATTGCATGGTCAACCTCAACAATCTGAGGGAATATTACCCTCAGAGAAAAACCTTGCCTTGGTGGATGTTGTCAGTGCTGCCATAACCAATGATCCTTCTCTTAAGGCAGCATTAGAAGCAGCTGTTTCCTCAATCATTGGAGACTCTCAGAACATCAATAACCATAGTCAATCACTACCAACTTTCTAA 1173 0.4254 MEGKVALKKLLEVQKKAHVNSTDALNWTEEPSIKNTLGSTLLSLSLNNLEPPQNHEQQHLNQLGLLQIELEEVKKENQNLRSMLNKISEHYAALQNQLLSAMQQKKLSSSPRNNEDMQRDSRQEDMEKPVLSSCSQFLNTGKFNKQVTTSQEAKTIEEQAFEASCKKARVSVRARSESSLMGDGCQWRKYGQKISKGNPCPRAYYRCNMGTACPVRKQVQRCSEDESVVITTYEGNHNHSLPPAAKSMASTTSAALKMFLSGSTSSSHGSTYSYSNSDLFSPLFTSTYYPSASSSCPTINLDFTQTSKDNLKFPSVISSNHLQPFPLSLHGQPQQSEGILPSEKNLALVDVVSAAITNDPSLKAALEAAVSSIIGDSQNINNHSQSLPTF* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0348 390 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 385 IPR044810 GO:0003700
Gso17g0348 390 SUPERFAMILY WRKY DNA-binding domain 174 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso17g0348 390 MobiDBLite consensus disorder prediction 103 128 - -
Gso17g0348 390 ProSiteProfiles WRKY domain profile. 176 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso17g0348 390 Coils Coil 56 104 - -
Gso17g0348 390 MobiDBLite consensus disorder prediction 112 127 - -
Gso17g0348 390 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 385 - -
Gso17g0348 390 Gene3D WRKY domain 165 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso17g0348 390 SMART WRKY_cls 181 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso17g0348 390 Pfam WRKY DNA -binding domain 183 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0348 Gso-Chr17 3139026 3143878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0348 153 306 WRKY Transcription Factor Family AT4G04450 60.256 1.13e-61 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso17g0348 WRKY 1.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0348 - - gmx:100779314 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0871 13 23011026 23014864 Gso17g0348 17 3139026 3143878 GST
Gso17g0348 17 3139026 3143878 Gso1g0372 1 4711945 4718189 PCT
Gso15g1536 15 19209359 19215025 Gso17g0348 17 3139026 3143878 PCT