Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0347 ATGCAGATCTTTGTGAAAACTTTGACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCTGACAGCATCGAAAACGTGAAAGCTAAGATTGAAGAAAAGGAAGGGATCCCACCTGATCAGCAGAGGCTTATCTTTGCCGGGAAACAACTTGAAGATGGAAGAACCCTTGAAGACTATGAAATCCAGAAGGAATCAACGCTGCACTTGGTGTTGCGGCTTCGTGGTGGCATGCAAATTTTTGTCAAGACCTTGACGGGAAAGACCATAACTTTAGAGGTTGAAGGTTCTGATACAATTGAAAATGTGAAAGCTAAGATTCAGGAAAAGGAGGGCATTCCACCGGATCAGCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGAGCGTACCTTGGAAGATTACGATATTCAAAAGGAATCCACCCTGCACCTTGTCCTTCGCCTTCGTGGTGGTTTCTAA 462 0.4459 MQIFVKTLTGKTITLEVESSDSIENVKAKIEEKEGIPPDQQRLIFAGKQLEDGRTLEDYEIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDTIENVKAKIQEKEGIPPDQQRLIFAGKQLEDERTLEDYDIQKESTLHLVLRLRGGF* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0347 153 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Gso17g0347 153 PANTHER - 1 152 - -
Gso17g0347 153 Gene3D - 77 153 - -
Gso17g0347 153 Gene3D - 1 76 - -
Gso17g0347 153 SMART ubq_7 77 148 IPR000626 GO:0005515
Gso17g0347 153 SMART ubq_7 1 72 IPR000626 GO:0005515
Gso17g0347 153 CDD Ubl_ubiquitin 77 152 - -
Gso17g0347 153 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Gso17g0347 153 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Gso17g0347 153 CDD Ubl_ubiquitin 1 76 - -
Gso17g0347 153 PRINTS Ubiquitin signature 11 31 IPR019956 -
Gso17g0347 153 PRINTS Ubiquitin signature 32 52 IPR019956 -
Gso17g0347 153 PRINTS Ubiquitin signature 53 74 IPR019956 -
Gso17g0347 153 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Gso17g0347 153 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Gso17g0347 153 PANTHER UBIQUITIN 1 152 - -
Gso17g0347 153 SUPERFAMILY Ubiquitin-like 75 152 IPR029071 -
Gso17g0347 153 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Gso17g0347 153 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0347 Gso-Chr17 3132755 3133855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0347 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 90.909 1.76e-46 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0347 - K08770 gmx:102664645 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0872 13 23017265 23023727 Gso17g0347 17 3132755 3133855 GST