Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0343 ATGGGCATTGAATTTGAATACTGGTCAGGCAGGGACCCTAGTCAAGAAGGGAAGAAAAATTTTCACGTTTACGAAAGAGAAAAGGAAGGAAAGAAAAAGAGAGCTAGCATTGCATTTGAGAGAGCATCCATGGAAGTGGAGGACGACTGGGATTTGAGCGCAGAGGACCTCGATTCCCTCGAAAGAGACGCTTTCCAGAAAATTGCCCAACTACGCAACCCTACTCCTTCTTCTCCGCATCAACGCCACCATTCTGCAACTGCAACAACCAACCACCTTCCTCCGAAACCCCTTCCCGATTCGCGTCCCCAAACTGCTGGTACTTTGTCTCAAGCAGCAAGAGCATTGCCCACGTCATTCAAATCAGGGACAAACAACGACAAGCAGTCAAAAGAGCTGCCAAAGTTTTCAGTCAAATTTTTTCTTCATTCCAGTGGAAATGTTGCAGCCAAGTTTCAATATGACCAGGTAGTAATTGCTGCTTTTCGAAGAATCCCTAGATCTTCTTGGAATGCAAAGGAACGGTTATGGATATTCCCACTATCTTCATTGTTAGAAGCAGAGAAGGTTCTTGGAGAAATACCTAGTTATAGTGTTCAGGTAGATAACTTAGATCCCTTAGTGAAACGTGCTGTTGCTGCAGCGTCTGCAGTTCCAGATCTTCAAGATCGATACCACAAGATCCCTAGTTATATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTACAGCATGGAGGACGTGTTCTCTTAGCAGATGAAATGGGACTTGGGAAAACTTTGCAGGCCATTGCTGTAGCTTCTTGCATACAGGACTTGTGGCCTGTTCTCATAATTGCACCGTCTTCGTTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTATCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTTCAAGTGCCAAAAGCAGCATTCGTCTGGATGGACTATTCAACATTATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTTATGACACATGACTTTAAGGTTGTGATTGCTGATGAGTCGCATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCACGACCAATTGAATTATTCAAGCAGTTGGAAGCTTTGTATCCTGATGTATATAGGAACGTTCATGAATATGGTAACCGTTACTGCAAGGGTGGAGTTTTTGGAGTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCACAACTTGATCAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTGGAAAACAAGGACATGAAGCAAATTAATGCTCTATTTCAAGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCAGCTAAATCACAAGAGGAGGCTGAATCACTCAAGTTTGCTCAAAAGAATCTTATTAACAAGATATATACTGATTCTGCAGAAGCTAAGATTCCATCTGTTCTTGATTATATCGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATTGATTCAATACATGAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACACCTGCTGCTTCTAGGCAACAATTGGTTACAGACTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCAGAATTGTCTTGGACTCCTGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGTTAGACGGCCATGAGAACGTCTTGGAGGTCTCAGCTAGTCTGCCGGTGAATAGCCCTTCAAAGCAGAAAACTATAGACCAGTATGTTAGAAAATCTGATAACATGGGTAGTTTGGTGAGTAGCCCTTCAAAGCAGAAAACTCTAGACCAGTTTGTTAGAAGATGCGATAATACGGATAGGTTGGAATATGAGCCCAACCCCAAACGTCCCCGAAGCTGA 2256 0.4202 MGIEFEYWSGRDPSQEGKKNFHVYEREKEGKKKRASIAFERASMEVEDDWDLSAEDLDSLERDAFQKIAQLRNPTPSSPHQRHHSATATTNHLPPKPLPDSRPQTAGTLSQAARALPTSFKSGTNNDKQSKELPKFSVKFFLHSSGNVAAKFQYDQVVIAAFRRIPRSSWNAKERLWIFPLSSLLEAEKVLGEIPSYSVQVDNLDPLVKRAVAAASAVPDLQDRYHKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQDLWPVLIIAPSSLRLQWASMIQQWLNIPSSDILIVLSQSGGSNRGGFNIVSSSAKSSIRLDGLFNIISYDLVPKLQNMLMTHDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGVFGVYQGASNHEELHNLIKATVMIRRLKKDVLSQLPVKRRQQVFLDLENKDMKQINALFQELEMVKAKIKAAKSQEEAESLKFAQKNLINKIYTDSAEAKIPSVLDYIGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGGTPAASRQQLVTDFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENVLEVSASLPVNSPSKQKTIDQYVRKSDNMGSLVSSPSKQKTLDQFVRRCDNTDRLEYEPNPKRPRS* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0343 751 MobiDBLite consensus disorder prediction 11 34 - -
Gso17g0343 751 ProSiteProfiles HARP domain profile. 129 206 IPR010003 -
Gso17g0343 751 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 46 717 - -
Gso17g0343 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 459 IPR027417 -
Gso17g0343 751 Gene3D - 208 465 IPR038718 -
Gso17g0343 751 Gene3D - 467 737 IPR027417 -
Gso17g0343 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 688 IPR027417 -
Gso17g0343 751 CDD DEXHc_HARP_SMARCAL1 236 459 - -
Gso17g0343 751 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 46 717 IPR030101 GO:0006281|GO:0031297|GO:0036310
Gso17g0343 751 MobiDBLite consensus disorder prediction 72 111 - -
Gso17g0343 751 CDD SF2_C_SNF 532 656 - -
Gso17g0343 751 Pfam Helicase conserved C-terminal domain 544 645 IPR001650 -
Gso17g0343 751 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 245 417 IPR014001 -
Gso17g0343 751 Coils Coil 488 512 - -
Gso17g0343 751 MobiDBLite consensus disorder prediction 72 94 - -
Gso17g0343 751 SMART ultradead3 232 425 IPR014001 -
Gso17g0343 751 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 536 688 IPR001650 -
Gso17g0343 751 Pfam SNF2-related domain 254 514 IPR000330 GO:0005524|GO:0140658
Gso17g0343 751 SMART helicmild6 562 645 IPR001650 -
Gso17g0343 751 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0343 Gso-Chr17 3103898 3113908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0343 426 672 RAD5 or RAD16-like Gene Family AT1G61140 28.462 7.66e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso17g0343 SNF2_N 9.4e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0343 K14440 - gmx:100778246 1478.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0343 17 3103898 3113908 Gso17g0343 17 3103898 3113908 ECH
Gso13g0874 13 23035770 23045376 Gso17g0343 17 3103898 3113908 GST