Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0340 ATGGCCAGACAGCAAGATTTCAAGAAGAACAAGATGATGAAGAAGGAGGAAAGTAACAAAACACTACCATTTCACAAACTTTTTTCATTTGCAGACTCAAGGGATTATCTATTGATGTTTGTTGGGACAATAAGTGCTGCTGGGAATGGAATGACTAAGGCTTCAACGAATATAGTTATGGGAGAAGCAATTGAAGCTTTTAGAAGAAGTGGTAACACTAAACAAGTAGTTCATGAAGTTTCCCAGGTGTCTCTGAAGTTCGCACTACTAGGTGCAATTTCCTTTCTGGCAGCATTTCTACAGGTGGCTTGTTGGGTATCCACCGGGGAGAGACAAGCAGCGAGAATTCGAGGCTTATACCTCAAAGCAGTTCTGAGACAAGATATAAGCTACTTTGACAAGGAAACCAATACTGGTGAGGTTGTTGAAAGGATGTCAGGTGACACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAGTGTGTAGCATGTTTTTTAGGAGGTTTAGTCATAGCATTCATCAAGGGTTGGTTTCTAACCCTTGTCCTTCTATCTTGTATTCCACCTCTTGTCCTCTCCGGCTCCATAATGAGCATTGCTTTTGCAAAGTTGGCATCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAACTGTAGCAGCGTGTGCAATTGGTTCAATTCGAACTGTTGCATCATTTACAGGCGAGAATCAAGCTATAGCTCAATACAATCAATCCTTAACAAAAGCTTACAGGACTGCAGTGCAAGATGGAGTGGCTGCTGGTTTAGGCCTGGGGTCAATCCGTTTTTTTATTACCAGTAGTTTTGCATTGGCTTTATGGTTTGGAGCAAAGATGGTACTAGAGAAAGGCTATACACCAGGTCAAGTCATGAGTATATTTCTGGCACTATTTTATGCCTCCATGTCTTTGGGGCAGGTTTCTACAAATTTAACAGCATTTGCTGCAGGACAAGCTGCCGCCTTTAAAATATTTGAAACAATAAATAGGCATCCAGATATTGATGCTTACGACACTGCTGGTCAACAGAAAGATGATATTTCTGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTTCAAGACCAGATGCATTGATATTCAATGGATTTTCTATTTCAATATCAAGTGGTACTAATGCAGCTTTGGTTGGGAAAAGTGGGAGTGGGAAATCAACAGTTATTAGTTTGATTGAGAGATTTTATGATCCACAAGCTGGTGAAGTTCTTATTGATGGTATCAACCTCAGAGAATTACAGTTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCGGTTCTCTTCCATTGTAGCATTAAAGAAAATATTGCCTATGGTAAGGATGGGGCAACAGATGAAGAAATCAGAGCCGCCACTGAACTTGCTAATGCAGCTAAATTCATAGATAAATTTCCACATGGACTTGACACAGTTGCTGGTGAGCATGGTACACAGCTCTCTGGGGGTCAAAAGCAAAGAATTGCCATAGCAAGGGCAATTCTGAAAGATCCAAGAGTTCTGCTCCTTGATGAAGCTACAAGTGCCCTTGACGCTGAGTCTGAGAGAGTGGTGCAAGAGACACTAGACAAAGTTATGATAAACCGAACAACGATCATTGTAGCACACCGCCTAAACACAATAAGGAATGCTGATACCATATCTGTTATTCATCAAGGAAGAGTAGTAGAAAATGGTACACATGCGGAGCTCATTAAAGATCCAGATGGAGCTTATAGCCAGCTCATTAGATTGCAAGAAATTAACAAGCAGTTAGATGGTACAGATGACTCCGGCAGGGTAGAAAACTCTGTAGATTCTGAACGACAATCAAGCCAGTGGTTTCCTTTCCCTCAATCTTTAAGCTTGGGATCATCTGGAACAGGAAACAGCAGTCATGACTCATTCAGAATATCAAATGCTATGCCTACTACACTTGATCTCTTGAAAACATCAGAAGAAGGACCTGAAGTTCTTCCTCCAGTAGTATCACATTCACCTCCCGAAGTCTCATTCCTTCACCTTGTTTATCTTAACAAGCCTGAAATCCCAGAGTTAGTCCTAGGGACTCTAGCTGCCATAGTAACTGGGGCAATACTACCCCTTATGGGGTTTCTTATCTCCAACATGATAAATACTTTCCTTGAGCCTGCAGATGAACTCCGTAAAGTCTCAAAGTTTTGGGCATTAATGTTTATTGCCCTTGGTGTAGCTGGCACCATATTTCATCCAATAAGGTCATACTTTTTTGCTGTAGCTGGTTCTAAGTTGATAAAAAGGATCGGGCTGATGTGTTTCAAGAAAATTATTCACATGGAAGTAGGCTGGTTTGACAAAGCTGGGAATTCAAGTGGAATACTTGGAGCAAGGCTGTCACTTGATGTGGCTTCTATTCGAACTTTTGTTGGGGATGCACTCGGTTTGATGGTTCAAGATGTTGCTACAGTAATCATAGCCTTGGTAATCGCCTTTGAGGCAAACTGGCAGCTTTCTCTCATCATTCTTGTTTTGCTACCTCTATTATTAGTAAATGGACAAGTGCAAATGGGATCCATGCAAGGATTTGTCACTGATGCAAAGAAACTATATGAGGAAGCAAGTCAAGTAGCGAATGACGCAGTAGGGAATATCAGAACAATTGCCGCTTTTTGTGCTGAAGAGAAGGTAATGAACTTATACCAGAAGAAATGTTTAGGACCCATCAAGACAGGTATATGGCAAGGTATAGTCAGCGGAACAAGTTTTGGGTTATCACTCTTCTTGGTGTTCTCGGTTAATTCATGCAGTTTTTATGCTGGAGCCCGACTTGTTGAGAATGGCAAAACATCAATCTCAGATGTTTTCCGTGTGTTTTTCACTCTCACAATGGCAGCTATAGCAATTTCACAATCTGGCTTCATGGCCCCAGGTGCAAGCAAAGCAAAAAGTTCTGTTACTTCTATATTTGCTATTCTTGACCAGAAATCAAGAATAGATCCCAGTGATGAGTGCGGAATGACATTGCAAGAAGTGAAGGGAGAAATTGAGTTCCACCATGTCACTTTCAAGTATCCAACCAGGCCTAATGTTCTTCTATTCAGAGATCTTTCCTTGACCATTCATGCAGGGGAGGTAACACCAACTGATACACTGACAGTTGCTCTAGCAGGCGAAAGTGGAAGTGGAAAGTCAACAGTAATCTCATTGCTGCAAAGATTTTATGAGCCAGATTCAGGTCAGATTACACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAGCAGATGGGTCTGGTAAGCCAGGAGCCTGTGCTGTTTAATGATACCATCAGAACCAACATTGCATATGGAAAAGGAGGTGATGCAACAGAAGCTGAAATTATAGCTGCAACTGAACTGGCAAATGCCCACACGTTCATTAGCAGTTTGCAGCAGGGTTATGACACCATAGTAGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCAAGAGCCATAGTGAAGAATCCAAAAATATTACTGCTAGATGAAGCCACAAGTGCACTTGATGTTGAGTCTGAAAGAGTGGTTCAGGATGCACTAGACCAAGTGATGGTGGACCGAACCACAATTGTGGTGGCTCACAGGTTATCCACCATAAAGGATGCAGATTCGATAGCAGTTGTTCAAAATGGAGTCATTGCTGAGCAAGGAAAACATGACACTTTGCTTAACAAGGGTGGTATCTATGCTTCATTAGTAGGCTTGCACACAAATCTTGTTTCATCTTAG 3822 0.4186 MARQQDFKKNKMMKKEESNKTLPFHKLFSFADSRDYLLMFVGTISAAGNGMTKASTNIVMGEAIEAFRRSGNTKQVVHEVSQVSLKFALLGAISFLAAFLQVACWVSTGERQAARIRGLYLKAVLRQDISYFDKETNTGEVVERMSGDTVLIQEAMGEKVGKFIQCVACFLGGLVIAFIKGWFLTLVLLSCIPPLVLSGSIMSIAFAKLASRGQAAYSEAATVAACAIGSIRTVASFTGENQAIAQYNQSLTKAYRTAVQDGVAAGLGLGSIRFFITSSFALALWFGAKMVLEKGYTPGQVMSIFLALFYASMSLGQVSTNLTAFAAGQAAAFKIFETINRHPDIDAYDTAGQQKDDISGDIELREVCFSYPSRPDALIFNGFSISISSGTNAALVGKSGSGKSTVISLIERFYDPQAGEVLIDGINLRELQLKWIRQKIGLVSQEPVLFHCSIKENIAYGKDGATDEEIRAATELANAAKFIDKFPHGLDTVAGEHGTQLSGGQKQRIAIARAILKDPRVLLLDEATSALDAESERVVQETLDKVMINRTTIIVAHRLNTIRNADTISVIHQGRVVENGTHAELIKDPDGAYSQLIRLQEINKQLDGTDDSGRVENSVDSERQSSQWFPFPQSLSLGSSGTGNSSHDSFRISNAMPTTLDLLKTSEEGPEVLPPVVSHSPPEVSFLHLVYLNKPEIPELVLGTLAAIVTGAILPLMGFLISNMINTFLEPADELRKVSKFWALMFIALGVAGTIFHPIRSYFFAVAGSKLIKRIGLMCFKKIIHMEVGWFDKAGNSSGILGARLSLDVASIRTFVGDALGLMVQDVATVIIALVIAFEANWQLSLIILVLLPLLLVNGQVQMGSMQGFVTDAKKLYEEASQVANDAVGNIRTIAAFCAEEKVMNLYQKKCLGPIKTGIWQGIVSGTSFGLSLFLVFSVNSCSFYAGARLVENGKTSISDVFRVFFTLTMAAIAISQSGFMAPGASKAKSSVTSIFAILDQKSRIDPSDECGMTLQEVKGEIEFHHVTFKYPTRPNVLLFRDLSLTIHAGEVTPTDTLTVALAGESGSGKSTVISLLQRFYEPDSGQITLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRTNIAYGKGGDATEAEIIAATELANAHTFISSLQQGYDTIVGERGIQLSGGQKQRVAIARAIVKNPKILLLDEATSALDVESERVVQDALDQVMVDRTTIVVAHRLSTIKDADSIAVVQNGVIAEQGKHDTLLNKGGIYASLVGLHTNLVSS* 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0340 1273 Gene3D - 360 618 IPR027417 -
Gso17g0340 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1013 1266 IPR027417 -
Gso17g0340 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1022 1266 IPR003439 GO:0005524
Gso17g0340 1273 SUPERFAMILY ABC transporter transmembrane region 20 344 IPR036640 GO:0005524|GO:0016021
Gso17g0340 1273 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 16 1270 IPR039421 -
Gso17g0340 1273 CDD ABC_MTABC3_MDL1_MDL2 1022 1264 - -
Gso17g0340 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g0340 1273 Pfam ABC transporter transmembrane region 39 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g0340 1273 Pfam ABC transporter transmembrane region 700 972 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g0340 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Gso17g0340 1273 SUPERFAMILY ABC transporter transmembrane region 690 1006 IPR036640 GO:0005524|GO:0016021
Gso17g0340 1273 Pfam ABC transporter 381 529 IPR003439 GO:0005524
Gso17g0340 1273 Pfam ABC transporter 1043 1197 IPR003439 GO:0005524
Gso17g0340 1273 MobiDBLite consensus disorder prediction 607 632 - -
Gso17g0340 1273 CDD ABC_6TM_Pgp_ABCB1_D2_like 691 1005 - -
Gso17g0340 1273 ProSitePatterns ABC transporters family signature. 1169 1183 IPR017871 GO:0005524
Gso17g0340 1273 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Gso17g0340 1273 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 323 - -
Gso17g0340 1273 Gene3D - 1012 1270 IPR027417 -
Gso17g0340 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 701 987 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g0340 1273 SMART AAA_5 389 575 IPR003593 -
Gso17g0340 1273 SMART AAA_5 1056 1249 IPR003593 -
Gso17g0340 1273 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Gso17g0340 1273 Gene3D ABC transporter type 1, transmembrane domain 86 996 IPR036640 GO:0005524|GO:0016021
Gso17g0340 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 600 IPR027417 -
Gso17g0340 1273 PANTHER TRANSPORTER ABC DOMAIN PROTEIN 16 1270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0340 Gso-Chr17 3081186 3087818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0340 15 1271 Calmodulin-binding Proteins AT2G36910 40.536 0.0 955
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0340 K05658 - gmx:100818527 2362.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0877 13 23060432 23066866 Gso17g0340 17 3081186 3087818 GST