Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0339 ATGGTGGCTGAGGCCGGCTTGGAAGCAGATATGACTTCAACCAAGACGACAGGATCAACGAGTGATCATCCACCAGCTCAAGGTCCTGAAAATACCCAAGAAATTGAATACATGCAGCAGGATTGCAAGAAGAACAAAATGAAGGGTGAAAGCAATAAAACAGTACCCTTTTACAAACTTTTCTCATTTGCAGACTCTTGGGATTGTCTTCTGATGGTAGTTGGGGCAATAAGTGCAGTTGGTAATGGAATCTCTATGCCTTTAATGACAATACTTATTGGAGATGCGATTGATGCTTTTGGAGGAAATGTTGATAATAAACAAGCAGTAGTTCATCAAGTTTCCAAGGCATCACTGAAGTTTGCATCCATCGGCGCAGGTGCCTTTTTTGCAGCATTCTTGCAGGTGGCTTGCTGGGTGATCACCGGGGAGAGACAAGCTGCAAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGCTTCTTTGACAAGGACACCAACAGTGGAGAGGTTGTTGGAAGGATGTCAGGTGACACGGTTCTTATTCAAGAGGCCATGGGAGAGAAGGTAGGAAAATTCATACAATATGTGGCATGTTTTTTTGGAGGTACAGTCATAGCATTCATCAAGGGTTGGCTTCTAAGCCTTGCTCTTCTATCTTCTCTTCCACTTCTTGTCCTCTCTGGTTCCGTAATGAGCTTTGCTTTTGCCAAGATGGCATCCCGAGGACAAACAGCTTATTCTGAAGCAGCTACTGTAGTGGAGCGGACAATTGGTTCAATTCGAACTGTTGCATCATTTACTGGTGAGAAGCAAGCTATAGCTCAATACAATCAATACTTAATTAAAGCTTACAGAGTTGGAGTGCAAGAGGGTGTGGCTGGAGGGTTTGGCTTTGGTTTAGTTCGTCTATTTATTTACTGTACCTATGCTTTGGCAGTGTGGTTTGGAGGGAAGATGGTACTAGAGAAAGGTTATACAGGAGGACAAGTCATTAGTATATTTTTTGCAGTTTTGACTGGTTCCATGTCTCTTGGGCAGGCATCTCCAAGCTTAACTGCATTCGCTGCAGGACAAGCTGCTGCCTTTAAAATGTTTGAAACGATTAAGAGGCAGCCAGATATTGATGCTTATGACACTGGTGGTCGACTGCTAGATGATATTTCTGGTGATATAGAGCTTAAGGAGGTCTGCTTTAGTTATCCTTCCAGACCTGATGAGCAAATATTCAATGGATTTTCAATTTCAATACCAAGTGGCACTACTGCAGCTTTGGTAGGGCAAAGTGGAAGTGGGAAATCAACAGTTATTAGTTTAATTGAGAGATTTTATGATCCACAAGCTGGTGAAGTTCTCATTGACGGTATCAATCTCAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGACTTGTCAGCCAGGAACCAGTTCTCTTTGCTTGCAGCATTAAAGAGAATATTGCCTATGGTAAAGATGGGGCAACAGATGAAGAAATCAGAGCGGCAGCTGAACTCGCTAATGCTGCTAAGTTCATAGATAAATTTCCCCATGGACTTGACACGATGGTTGGCGAGCATGGAATTCAGCTCTCTGGAGGTCAAAAACAAAGAATATCTATAGCAAGAGCAATTCTGAAGGATCCAAGAATTCTGCTCCTTGACGAAGCTACAAGTGCTCTTGATGCAGAATCAGAGAGAGTGGTGCAAGAGACCCTAGACAGAATTATGATAAACCGAACAACTGTCATTGTAGCCCACCGCCTAAGCACAATAAGGAATGCAGATGTCATTGCAGTTATTCATCATGGAAAAGTAATAGAGAAAGGCACACATGCTGAACTCACTAAAGATCCTGATGGAGCTTTTAGTCAGCTCATTAGATTGCAAAAAATTAAAAGGGAATCAGATCAATATGATGCAAATGAGTCAGGAAAGCCAGAAAACTTTGTAGATTCTGAACGACAATTGAGCCAACGGCTTTCTTTCCCTCAATCTTTTAGTCTGGAATCATCTGGAAGAGGAATCGACAGCCAACGCTCATTCAAAATATCAAATGCCATGCCAACCTCACCAGATCTCTTTGAAACATCTGAAGGAGGGCCTGAAGTTCTTCCTTCAGCAGCATCAAATAAACCTCAAGAAGTTTCACTTCTCCGCATTGCTTATCTTAACAAGCCTGAAATCCCAGTGTTACTCTTGGGGACTGTAGCAGCAGCAGCAACTGGGGCAATACTACCCACCGTGGGGCTTCTTCTCTCGCACATGATAAATACTTTTTTTGAGCCTGCAGATGAACTCCGTAAAGACTCAAAGTTTTGGGCATTAATATTTGTTGTACTTAGTGTGGCTGCCTTCATATTTATTCCATTAAGGTCCTACCTTTTTGCTGTAGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTTATGTGTTTTGAGAAAATAATTCAGATGGAAATAGGTTGGTTTGATAAAGCTGAGAATTCAAGTGGAGCACTTGGAGCAAGGCTCTCAACTGATGCGGCTTCTATTCGAACTTTGGTTGGGGATGCTCTTGGTTTGCTGGTTCAAGATATTTCTACTGCAATTACAGCCTTGGTAATTGCCTTTGACGCAAACTGGCAGCTTTCTCTCATCGTTCTTGTTTTGGTACCTCTAGTATTACTAAATGGAAATTTGCAAATGAAGTCCATGCAAGGATTTAGCACCAATGCAAAGAAACTATATGAGGAAGCAAGTCAAGTAGCGAGTGATGCAGTAGGGAATATCAGAACAGTTGCCGCTTTCGGTGCTGAAGAGAAGGTGATGGAATTATACCAGAAAAAATGTGTAGGACCAATTCAGACAGGTATAAGGCAAGGTTTAGTCAGCGGAACAGGTTTCGGCTTATCACTCTTCTTTCTGTTCTCTGTTTATGCATGCAGTTTTTATGCTGGGGCCAGACTTGTTGAGAGTGGCAAAACATCAATCTCTGATGTTTTCCGTGTATTTTTTGCTCTCTCTATGGCAGCTATAGCAATGTCACAATCTGGCTTCATGACCCCTGCTGCAAGTAAAGCAAAAAGTTCTGCTGCTTCTGTATTTGCTATTCTTGATCAGAAATCAAGAATAGACCCCAGTGATGAGTCTGGAATGACACTGGAAGAAGTGAATGGAGAGATCAGGTTCCACCATGTCACTTTCAAGTATCCAACAAGGCCTAACGTTCTTATATTCAAAGATCTTTCCTTGAACATTCATGCAGGAGAGACAATTGCTCTAGTAGGTGAAAGTGGAAGTGGAAAGTCATCAGTGATCTCATTGTTACAAAGATTTTATGACCCAGATTCGGGGCAGATTACACTGGATGGAACAGAAATCCAAAAGCTACGAATTAAATGGTTTAGGCAGCAGATGGGCCTGGTAAGCCAGGAGCCTGTGTTGTTCAATGACACCATCCGAGCCAATATTGCGTATGGAAAAGGTGATGACGCAACAGAAACTGAAATTATAGCAGCAGCTGAACTGGCCAATGCCCACAAGTTCATTAGCAGTTTGCAGCAGGGTTATGACACATTAGTGGGAGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGTGTGGCAATTGCAAGAGCCATAGTGAAGAGTCCAAAAATATTACTGCTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTTCAGGATGCACTTGATCGAGTGAGGATGGATAGAACCACAATTGTGGTGGCTCACAGGTTATCCACCATAAAGGATGCAGATTCAATTGCAGTTGTTGAAAATGGAGTCATTGCAGAGAAAGGAAAGCATGAAACTTTGCTTAACAAAGGTGGTACATATGCTTCCTTAGTAGCACTGCACATTAGTGCTTCTTCATCATCATAG 3912 0.4233 MVAEAGLEADMTSTKTTGSTSDHPPAQGPENTQEIEYMQQDCKKNKMKGESNKTVPFYKLFSFADSWDCLLMVVGAISAVGNGISMPLMTILIGDAIDAFGGNVDNKQAVVHQVSKASLKFASIGAGAFFAAFLQVACWVITGERQAARIRGLYLKAILRQDISFFDKDTNSGEVVGRMSGDTVLIQEAMGEKVGKFIQYVACFFGGTVIAFIKGWLLSLALLSSLPLLVLSGSVMSFAFAKMASRGQTAYSEAATVVERTIGSIRTVASFTGEKQAIAQYNQYLIKAYRVGVQEGVAGGFGFGLVRLFIYCTYALAVWFGGKMVLEKGYTGGQVISIFFAVLTGSMSLGQASPSLTAFAAGQAAAFKMFETIKRQPDIDAYDTGGRLLDDISGDIELKEVCFSYPSRPDEQIFNGFSISIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFACSIKENIAYGKDGATDEEIRAAAELANAAKFIDKFPHGLDTMVGEHGIQLSGGQKQRISIARAILKDPRILLLDEATSALDAESERVVQETLDRIMINRTTVIVAHRLSTIRNADVIAVIHHGKVIEKGTHAELTKDPDGAFSQLIRLQKIKRESDQYDANESGKPENFVDSERQLSQRLSFPQSFSLESSGRGIDSQRSFKISNAMPTSPDLFETSEGGPEVLPSAASNKPQEVSLLRIAYLNKPEIPVLLLGTVAAAATGAILPTVGLLLSHMINTFFEPADELRKDSKFWALIFVVLSVAAFIFIPLRSYLFAVAGSKLIKRIRLMCFEKIIQMEIGWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDISTAITALVIAFDANWQLSLIVLVLVPLVLLNGNLQMKSMQGFSTNAKKLYEEASQVASDAVGNIRTVAAFGAEEKVMELYQKKCVGPIQTGIRQGLVSGTGFGLSLFFLFSVYACSFYAGARLVESGKTSISDVFRVFFALSMAAIAMSQSGFMTPAASKAKSSAASVFAILDQKSRIDPSDESGMTLEEVNGEIRFHHVTFKYPTRPNVLIFKDLSLNIHAGETIALVGESGSGKSSVISLLQRFYDPDSGQITLDGTEIQKLRIKWFRQQMGLVSQEPVLFNDTIRANIAYGKGDDATETEIIAAAELANAHKFISSLQQGYDTLVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVRMDRTTIVVAHRLSTIKDADSIAVVENGVIAEKGKHETLLNKGGTYASLVALHISASSSS* 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0339 1303 ProSitePatterns ABC transporters family signature. 1198 1212 IPR017871 GO:0005524
Gso17g0339 1303 PANTHER TRANSPORTER ABC DOMAIN PROTEIN 48 1299 - -
Gso17g0339 1303 CDD ABC_6TM_Pgp_ABCB1_D2_like 726 1041 - -
Gso17g0339 1303 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 396 632 IPR003439 GO:0005524
Gso17g0339 1303 MobiDBLite consensus disorder prediction 684 713 - -
Gso17g0339 1303 CDD ABC_MTABC3_MDL1_MDL2 1058 1293 - -
Gso17g0339 1303 MobiDBLite consensus disorder prediction 10 30 - -
Gso17g0339 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 634 IPR027417 -
Gso17g0339 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1047 1295 IPR027417 -
Gso17g0339 1303 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 737 1023 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g0339 1303 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 73 361 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g0339 1303 MobiDBLite consensus disorder prediction 640 659 - -
Gso17g0339 1303 MobiDBLite consensus disorder prediction 640 654 - -
Gso17g0339 1303 MobiDBLite consensus disorder prediction 1 30 - -
Gso17g0339 1303 Gene3D - 1048 1301 IPR027417 -
Gso17g0339 1303 Pfam ABC transporter 1077 1226 IPR003439 GO:0005524
Gso17g0339 1303 Pfam ABC transporter 415 563 IPR003439 GO:0005524
Gso17g0339 1303 CDD ABC_6TM_Pgp_ABCB1_D1_like 72 357 - -
Gso17g0339 1303 SUPERFAMILY ABC transporter transmembrane region 59 380 IPR036640 GO:0005524|GO:0016021
Gso17g0339 1303 Gene3D - 394 647 IPR027417 -
Gso17g0339 1303 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1058 1295 IPR003439 GO:0005524
Gso17g0339 1303 SUPERFAMILY ABC transporter transmembrane region 725 1042 IPR036640 GO:0005524|GO:0016021
Gso17g0339 1303 Pfam ABC transporter transmembrane region 736 1006 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g0339 1303 Pfam ABC transporter transmembrane region 73 347 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g0339 1303 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 48 1299 IPR039421 -
Gso17g0339 1303 ProSitePatterns ABC transporters family signature. 535 549 IPR017871 GO:0005524
Gso17g0339 1303 Gene3D ABC transporter type 1, transmembrane domain 120 987 IPR036640 GO:0005524|GO:0016021
Gso17g0339 1303 SMART AAA_5 423 595 IPR003593 -
Gso17g0339 1303 SMART AAA_5 1085 1278 IPR003593 -
Gso17g0339 1303 CDD ABC_MTABC3_MDL1_MDL2 396 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0339 Gso-Chr17 3070911 3076531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0339 106 635 Calmodulin-binding Proteins AT2G36910 39.024 1.32e-112 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0339 K05658 - gmx:100777713 2415.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0339 17 3070911 3076531 Gso17g0339 17 3070911 3076531 ECH
Gso13g0879 13 23086811 23092975 Gso17g0339 17 3070911 3076531 GST