Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0338 ATGGAAGGGGATATCAGTGTGAATGGAGATCCTAACATTAACAACAATCATGACTCAAAGAAGAGGGATGACAAAGATGAACCCGCCAAAACAGTACCCTTATACAAGCTTTTCTCATTTGCTGATCCTTTGGATCTCTTGTTGATGTTTGTGGGGACTGTTGGTGCCATTGGGAATGGAATCTCCATGCCCTTAATGACTCTGATATTTGGAAGTCTGATCAATGCATTTGGAGAATCCAGTAACACTGACGAGGTCGTGGATGAAGTTTCCAAGGTGTCCCTGAAATTTGTATACTTGGCTGTGGGTACCTTTTTTGCGGCATTTTTGCAGTTGACATGCTGGATGATCACTGGGAATAGACAAGCTGCAAGAATTAGAGGATTATACCTTAAAACAATTTTGAGGCAGGATGTCAGTTTCTTTGATAAAGAGACTAGTACTGGAGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAAAAGGTGGGACAGTTCATACAGTTAGTGGCAACTTTCTTTGGAGGTTTTGTTGTAGCATTCATCAAGGGATGGCTTCTAACTGTTGTCATGTTATCTTGTATTCCACTTCTTGCCTTGTCCGGGGCTATGATAACTGTGATTATTTCAAAAGCATCATCTGAAGGACAAGCTGCTTATTCTACAGCAGCAATTGTAGTAGAGCAGACAATTGGTTCTATCCGAACTGTTGCATCATTCACTGGGGAGAGGCCAGCTATAGCTAAATACAATCAGTCCTTAACCAAGGCATACAAGACTGGAGTGCAAGAGGCACTAGCTTCTGGTTTGGGATTTGGCGTGCTCTACTTTGTTTTAATGTGCAGTTATGGTCTGGCTGTATGGTTTGGTGCAAAAATGGTAATAGAGAAAGGATATACAGGAGGCGAGGTCGTGACCATAATATTTGCTGTATTGACTGGCTCCTTCTCTATTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCTGGCCAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGAAATTGATGCTTACGGCACAACTGGTCTGAAGATTAATGACATTCGTGGCGATATAGAGCTCAAGGAAGTTTGCTTTAGTTATCCTACAAGACCTGATGAACTGGTATTCAATGGATTTTCGCTTTCAATACCAAGTGGCACTACCGCAGCTTTGGTGGGACAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTACGATCCACAGTCTGGTGCAGTACTTATTGATGGTATCAACCTCAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGCCAGGAACCAGTTCTCTTTACTTGTAGCATAAAAGAGAATATTGCCTACGGCAAGGATGGTGCAACTGATGAAGAAATCAGAGCTGCAGCAGAACTAGCTAACGCTGCCAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGCGAGCATGGTACTCAGCTCTCTGGGGGTCAAAAGCAAAGAGTGGCAATAGCAAGAGCAATTTTGAAAGATCCAAGAATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTGCAAGAGGCATTGGACAGAATAATGATAAACAGAACAACTGTCATTGTAGCCCACCGCTTAAGTACTATACGAAATGCTGATACCATTGCTGTTATCCATCAGGGAAAAATAGTTGAAAGCGGTTCACATGCGGAGCTCACCAAGGATCCTGATGGAGCCTATAGCCAGCTTATCAGACTACAAGAAATTAAAAGATCTGAAAAGAATGTAGACAACAGGGACAAATCTGGAAGTATTGGGCATTCTGGAAGACATTCAAGTAAAAGGTCTTCTTTCTTACGATCTATAAGCCAAGAGTCACTGGGAGTAGGAAACAGTGGTCGCCATTCATTCTCAGCATCATTTAGGGTGCCCACATCTGTTGGCTTCATAGAAGCTGCTACAGGCGAAGGGCCTCAAGATCCTCCACCAACAGCTCCTTCACCACCAGAAGTGCCTCTTTATCGCCTGGCTTCCCTAAACAAGCCAGAGATTCCAGTTTTACTGATGGGGACTGTAGCTGCTGTGCTAACTGGAGTGATATTACCAGTTTTTAGTATCTTGCTTACCAAAATGATAAGTATTTTCTATGAGCCACATCATGAACTCCGTAAAGATTCAAAAGTTTGGGCAATAGTGTTTGTTGGACTTGGTGCGGTATCATTACTTGTTTATCCAGGTAGATTCTACTTTTTTGGTGTTGCTGGGAGTAAATTGATCCAAAGAATTCGGAAAATGTGTTTTGAGAAAGTAGTTCACATGGAAGTAAGTTGGTTTGACGAAGCTGAGCATTCAAGTGGAGCAATTGGATCAAGGCTTTCTACTGATGCAGCTTCTATCCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATATTGCCACAGCAATAGCTGCATTGATAATTGCCTTCGAATCGAGCTGGCAGCTTGCTCTTATAATCCTTGCTTTGGTGCCGCTACTAGGACTAAATGGATATGTGCAATTAAAGTTCTTGAAAGGATTCAGTGCAGATACAAAGAAATTGTATGAGGAAGCGAGTCAAGTGGCAAATGATGCTGTGGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTGTACCAGGAAAAATGTGAAGGACCAATTAAGACAGGCAAAAGGCAAGGGATAATCAGTGGAATTAGTTTTGGAGTATCATTCTTTATGCTGTATGCAGTTTATGCAACCAGTTTTTATGCTGGAGCTCGACTGGTGGAGGATGGCAAATCTTCATTCTCAGATGTTTTCCGGGTCTTTTTTGCTCTCAGTATGGCAGCTTTGGGAATCTCTCAGTCTGGCTCTTTGGTCCCTGATTCAACTAAAGCAAAAGGTGCTGCTGCTTCCATATTTGCAATTCTTGACCGAAAGTCAGAAATAGACCCAAGTGATGACTCTGGAATGACACTGGAAGAAGTCAAAGGAGAGATTGAACTTAGGCATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATCTTAGCTTGACCATTCATACCGGCAAGACAGTAGCACTGGTTGGAGAAAGTGGATGTGGAAAATCGACAGTGATCTCATTGTTACAAAGATTTTATGACCCAGACTCAGGTCACATTATACTGGATGGAAAAGAAATCCAAAGTTTGCAAGTTAGATGGCTAAGACAACAGATGGGTCTGGTAAGTCAAGAGCCTGTGTTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAAGGAGATGCAACCGAGGCAGAAATTATAGCTGCGGCAGAATTGGCAAACGCTCATAGGTTCATTAGTAGTTTGCAGAAGGGTTATGACACGTTAGTAGGGGAACGAGGAGTTCAATTATCTGGGGGACAGAAGCAGCGTGTGGCAATTGCACGAGCTATAGTGAAGAACCCAAAAATATTACTGCTAGATGAAGCCACAAGTGCACTGGATGCTGAGTCTGAAAAAGTGGTTCAGGATGCACTAGACCGTGTCATGGTGGACCGAACCACAATAGTAGTGGCTCATAGGTTATCCACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAAAATGGGGTCATAGCAGAGAAGGGAAAGCATGAAGCATTACTTGACAAGGGAGGTGATTATGCTTCCTTAGTAGCATTGCATACAAGTGCTTCTACATCTTAG 3828 0.4255 MEGDISVNGDPNINNNHDSKKRDDKDEPAKTVPLYKLFSFADPLDLLLMFVGTVGAIGNGISMPLMTLIFGSLINAFGESSNTDEVVDEVSKVSLKFVYLAVGTFFAAFLQLTCWMITGNRQAARIRGLYLKTILRQDVSFFDKETSTGEVVGRMSGDTVLIQDAMGEKVGQFIQLVATFFGGFVVAFIKGWLLTVVMLSCIPLLALSGAMITVIISKASSEGQAAYSTAAIVVEQTIGSIRTVASFTGERPAIAKYNQSLTKAYKTGVQEALASGLGFGVLYFVLMCSYGLAVWFGAKMVIEKGYTGGEVVTIIFAVLTGSFSIGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYGTTGLKINDIRGDIELKEVCFSYPTRPDELVFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQSGAVLIDGINLREFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVESGSHAELTKDPDGAYSQLIRLQEIKRSEKNVDNRDKSGSIGHSGRHSSKRSSFLRSISQESLGVGNSGRHSFSASFRVPTSVGFIEAATGEGPQDPPPTAPSPPEVPLYRLASLNKPEIPVLLMGTVAAVLTGVILPVFSILLTKMISIFYEPHHELRKDSKVWAIVFVGLGAVSLLVYPGRFYFFGVAGSKLIQRIRKMCFEKVVHMEVSWFDEAEHSSGAIGSRLSTDAASIRALVGDALGLLVQNIATAIAALIIAFESSWQLALIILALVPLLGLNGYVQLKFLKGFSADTKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKCEGPIKTGKRQGIISGISFGVSFFMLYAVYATSFYAGARLVEDGKSSFSDVFRVFFALSMAALGISQSGSLVPDSTKAKGAAASIFAILDRKSEIDPSDDSGMTLEEVKGEIELRHVSFKYPTRPDVQIFRDLSLTIHTGKTVALVGESGCGKSTVISLLQRFYDPDSGHIILDGKEIQSLQVRWLRQQMGLVSQEPVLFNDTIRANIAYGKGDATEAEIIAAAELANAHRFISSLQKGYDTLVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLDKGGDYASLVALHTSASTS* 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0338 1275 ProSitePatterns ABC transporters family signature. 1171 1185 IPR017871 GO:0005524
Gso17g0338 1275 CDD ABC_MTABC3_MDL1_MDL2 1032 1266 - -
Gso17g0338 1275 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 337 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g0338 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 610 IPR027417 -
Gso17g0338 1275 CDD ABC_6TM_Pgp_ABCB1_D2_like 700 1015 - -
Gso17g0338 1275 Pfam ABC transporter transmembrane region 49 323 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g0338 1275 Pfam ABC transporter transmembrane region 710 981 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g0338 1275 MobiDBLite consensus disorder prediction 1 27 - -
Gso17g0338 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1021 1268 IPR027417 -
Gso17g0338 1275 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 333 - -
Gso17g0338 1275 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 13 1271 - -
Gso17g0338 1275 Gene3D - 370 627 IPR027417 -
Gso17g0338 1275 Gene3D - 1022 1274 IPR027417 -
Gso17g0338 1275 ProSitePatterns ABC transporters family signature. 511 525 IPR017871 GO:0005524
Gso17g0338 1275 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 711 997 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g0338 1275 SUPERFAMILY ABC transporter transmembrane region 692 1017 IPR036640 GO:0005524|GO:0016021
Gso17g0338 1275 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1032 1268 IPR003439 GO:0005524
Gso17g0338 1275 SMART AAA_5 1059 1251 IPR003593 -
Gso17g0338 1275 SMART AAA_5 399 585 IPR003593 -
Gso17g0338 1275 Pfam ABC transporter 1051 1199 IPR003439 GO:0005524
Gso17g0338 1275 Pfam ABC transporter 391 539 IPR003439 GO:0005524
Gso17g0338 1275 Gene3D ABC transporter type 1, transmembrane domain 95 1001 IPR036640 GO:0005524|GO:0016021
Gso17g0338 1275 PANTHER - 13 1271 - -
Gso17g0338 1275 SUPERFAMILY ABC transporter transmembrane region 30 354 IPR036640 GO:0005524|GO:0016021
Gso17g0338 1275 MobiDBLite consensus disorder prediction 614 630 - -
Gso17g0338 1275 MobiDBLite consensus disorder prediction 614 640 - -
Gso17g0338 1275 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 372 608 IPR003439 GO:0005524
Gso17g0338 1275 CDD ABC_MTABC3_MDL1_MDL2 372 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0338 Gso-Chr17 3046170 3052060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0338 4 616 Calmodulin-binding Proteins AT2G36910 36.876 6.90e-114 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0338 K05658 - gmx:100776122 2368.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0880 13 23100512 23106175 Gso17g0338 17 3046170 3052060 GST