Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0333 ATGGTGATTATAAACCTTGTGAAGAAGAAGAAGAAGAGCGAGAGAGAAGGAATGCGACTTGGGAAATACGACTTGGGTAGGACTCTTGGTGAGGGCAATTTTGGCAAAGTCAAGTTCGCTAGGAACACTGATTCTGGCCAAGCTTTTGCTGTTAAGATCATTGACAAGAACACCATCGTCGATATCAACATCACCAATCAGATAATTAGGGAAATAGCGACCTTAAAGCTCCTACGGCATCCCAACGTTGTTAGATTATATGAGGTCTTGGCTAGCAAAACAAAAATTTATATGGTACTTGAGTACGTGAATGGAGGGGAGTTATTTGACATAATTGCATCCAAAGGTAAACACATCGAAGGTGAAGGTAGAAAGCTGTTCCAACAGTTAATTGATGGGGTGAGCTACTGCCACACTAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAGAATGTACTAGTGGATAACAAAGGGAACATCAAAATAACTGATTTTGGTCTTAGTGCTTTACCCCAGCATCTTAGGGAAGATGGATTGCTGCATACAACTTGTGGAAGTCCCAATTATGTTGCACCAGAGGTACTTGCTAATAAGGGCTATGACGGTGCAACATCAGATACATGGTCATGTGGTGTTATATTGTATGTGATCCTAACAGGACACTTACCTTTTGACGATAGAAATCTTGTAGTTCTCTATCAGAAGATTTTTAAAGGAGATGTTCAGATACCAAAATGGCTAACACCGGGTGCACGGAATATGATAAGGAGAATTCTTGATCCTAACCCCGAAACACGGATAACAATGGCTGGGATCAAAGAAGATCCATGGTTCAAGAAGGGTTACATTCCAGTAAATCCTGAGGATGAGGATGTATATGTTGACCAAGAAGCCTTTTCCATCCATGAACAGCCAAATGAAGCAGAACAGAGGAATTCAGGATCACCATCCCTAATCAATGCATTTCAGTTGATAGGGATGTCTTCATGCTTAGACCTCTCTGGCTTTTTTGAGAAAGAGGATGTTTCTGAGAGAAAGATAAGATTTGCGTCAAATCTTTCGGTTAAAGATCTGATCGAGAGGATTGAAGATACTGCGACAGAAATGGAATTTAGAGTCGAGAAGAAAAATGGCAAATTGAAAGTGATCCGAGAGAACAAAGTGCACAAAACTCTTGGCTGCCTCTCAGTGGTAGTAGAGGTGTTTGGAATAAGCTCATCATTGTATGTAGTAGAATTAAGGAAGTCTTATGGAGATGGTTCTGTATATAAACAGTTATGCAATAAATTATTAAATGATTTGGGAATTCCCCCCAAGCAACCGCTAGTGAGATCAGCAGCAAATTAG 1347 0.4053 MVIINLVKKKKKSEREGMRLGKYDLGRTLGEGNFGKVKFARNTDSGQAFAVKIIDKNTIVDINITNQIIREIATLKLLRHPNVVRLYEVLASKTKIYMVLEYVNGGELFDIIASKGKHIEGEGRKLFQQLIDGVSYCHTKGVFHRDLKLENVLVDNKGNIKITDFGLSALPQHLREDGLLHTTCGSPNYVAPEVLANKGYDGATSDTWSCGVILYVILTGHLPFDDRNLVVLYQKIFKGDVQIPKWLTPGARNMIRRILDPNPETRITMAGIKEDPWFKKGYIPVNPEDEDVYVDQEAFSIHEQPNEAEQRNSGSPSLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFASNLSVKDLIERIEDTATEMEFRVEKKNGKLKVIRENKVHKTLGCLSVVVEVFGISSSLYVVELRKSYGDGSVYKQLCNKLLNDLGIPPKQPLVRSAAN* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0333 448 ProSiteProfiles NAF domain profile. 314 338 IPR018451 GO:0007165
Gso17g0333 448 CDD CIPK_C 320 431 - -
Gso17g0333 448 SUPERFAMILY Protein kinase-like (PK-like) 20 290 IPR011009 -
Gso17g0333 448 PANTHER SERINE/THREONINE KINASE 15 445 - -
Gso17g0333 448 ProSiteProfiles Protein kinase domain profile. 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0333 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Gso17g0333 448 Gene3D Transferase(Phosphotransferase) domain 1 15 321 - -
Gso17g0333 448 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Gso17g0333 448 Gene3D Kinase associated domain 1, KA1 322 435 - -
Gso17g0333 448 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 15 445 - -
Gso17g0333 448 Pfam Protein kinase domain 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0333 448 Pfam NAF domain 316 375 IPR004041 GO:0007165
Gso17g0333 448 SMART serkin_6 23 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0333 Gso-Chr17 3007269 3012505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0333 86 443 CBL-interacting serine-threonine protein kinases AT3G17510 68.232 8.18e-171 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gso17g0333 Pkinase 2.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0333 K07198 - gmx:100805710 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0333 17 3007269 3012505 Gso17g0333 17 3007269 3012505 ECH
Gso13g0886 13 23148070 23153439 Gso17g0333 17 3007269 3012505 GST
Gso17g0333 17 3007269 3012505 Gso15g1544 15 19566545 19575698 PCT
Gso15g1544 15 19566545 19575698 Gso17g0333 17 3007269 3012505 PCT