Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0329 ATGCAATTTAGTTTTTTTTTTCTCCTTTTCCTTTTGCACGTTTACTGGGGAACTGAGTTTCTTTCAGCAAATGAATGCACTTTTCTTTTTGTTTTTATATATGAGAAGGATGTCAAACAATCTAGTTTCTTGCTGGAATTTTGTATGACTGGATTTGAGATTCTCTTTCTCAAAAATAGTTGTATGTGGTGCGAGGAATCCGATGCACGAGTTTGGTGTCATCCCAATATATATTGGCAGTGGCAAATGGCATCCGATCTAAATTCGGGGTTGTCCCAGGAAACGTCTGTTTTTGGGTTGAAAGCATGGGAATTGATGGGGATAATAGTTGGGTTGTTCATTATAATTATTCTCGTGGTGATATCAATATGTCTTACTTCAAGAAAGAAATCTAGAAGAGTCAATGGCATGCTTCCCCTTAGCCATATGTTATCGGTTTCAGATGAGATCAAGGAAATTAGAGTTGATCAAGTTTCAGCCAATAATCATCCTCAGAATGGAGCTTTTGTGAGTCTGTATGACAGGTTTAGTGACAGGGATTCTGAAAAAGTTTTGATCCAAACAAATAACGGGGAAAATAGCAGTCAATCAGGCTCATTTGTTCATCTTAAGAAAGATGATGGCTCTCAATCAGGCGAAGAAAGTGGTGCTAAGTCTGTTTCTACTTACAGGTCTTCTTCACATCCTATAACTGCACCGTCCCCCTTGTGTGGTCTGCCTGAATTTTCTCACCTTGGCTGGGGACACTGGTTTACGTTAAGGGACCTAGAACTTGCAACAAACAGGTTTTCAAAAGACAATGTTATTGGTGAAGGTGGATATGGTGTTGTTTATCAGGGCCAGTTAATCAATGGGAGTCCTGTGGCTGTTAAGAAGCTACTCAATAATCTAGGACAAGCTGAAAAGGAATTTAGAGTGGAAGTTGAGGCTATTGGCCATGTGCGGCACAAGAATTTGGTTAGACTTTTAGGCTATTGCATTGAAGGCACTCACAGGTTGCTGGTTTATGAGTATGTTAACAATGGCAATTTAGAGCAATGGCTTCATGGAGCCATGCGGCAGTATGGTTTTCTTACTTGGGATGCTCGGATTAAAATTCTTCTTGGAACAGCTAAAGCGCTAGCTTACTTGCACGAGGCAATTGAGCCAAAAGTTGTACATCGAGATATTAAATCAAGCAATATTCTAATTGATGATGACTTCAATGCCAAAATATCTGACTTTGGGCTGGCAAAGTTATTGGGTGCTGGAAAAAGTCATATCACAACTCGAGTAATGGGTACTTTTGGATATGTGGCTCCAGAATATGCCAATTCTGGATTACTAAATGAGAAGAGTGATGTTTATAGCTTTGGGGTATTGCTCCTCGAAGCAATTACTGGAAGAGACCCAGTGGATTATAGCCGACCAGCAACTGAGGTAAATTTGGTTGACTGGCTCAAGATGATGGTTGGGAATAGGCGCGCAGAAGAGGTGGTAGACCCTAACATTGAGACCAGGCCATCAACAAGTTCCCTTAAACGTGCCCTTTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAGAAAAGACCAAAGATGAGTCAAGTTGTCCGCATGCTTGAATCAGAAGAATATCCCATACCACGCGAGGATCGAAGACGCCGAAAGAGCCAGGCAGGAAATATGGAGCTGGAGGCCCAGAAGGAGACCTCCGACACAGAGATGACTGAGAATCCAGATTCCAAGTCCAATGGCAGAAGGAACCAAAGGAAGTAG 1758 0.4175 MQFSFFFLLFLLHVYWGTEFLSANECTFLFVFIYEKDVKQSSFLLEFCMTGFEILFLKNSCMWCEESDARVWCHPNIYWQWQMASDLNSGLSQETSVFGLKAWELMGIIVGLFIIIILVVISICLTSRKKSRRVNGMLPLSHMLSVSDEIKEIRVDQVSANNHPQNGAFVSLYDRFSDRDSEKVLIQTNNGENSSQSGSFVHLKKDDGSQSGEESGAKSVSTYRSSSHPITAPSPLCGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGVVYQGQLINGSPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQYGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPATEVNLVDWLKMMVGNRRAEEVVDPNIETRPSTSSLKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRRKSQAGNMELEAQKETSDTEMTENPDSKSNGRRNQRK* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0329 585 PANTHER OS01G0323000 PROTEIN 84 585 - -
Gso17g0329 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 385 397 IPR008271 GO:0004672|GO:0006468
Gso17g0329 585 SUPERFAMILY Protein kinase-like (PK-like) 247 543 IPR011009 -
Gso17g0329 585 CDD STKc_IRAK 269 535 - -
Gso17g0329 585 PANTHER RECEPTOR-LIKE KINASE PLANT 84 585 - -
Gso17g0329 585 MobiDBLite consensus disorder prediction 187 226 - -
Gso17g0329 585 MobiDBLite consensus disorder prediction 187 204 - -
Gso17g0329 585 MobiDBLite consensus disorder prediction 534 585 - -
Gso17g0329 585 Pfam Protein kinase domain 264 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0329 585 SMART serkin_6 263 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0329 585 ProSiteProfiles Protein kinase domain profile. 263 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0329 585 Gene3D Phosphorylase Kinase; domain 1 245 338 - -
Gso17g0329 585 ProSitePatterns Protein kinases ATP-binding region signature. 269 292 IPR017441 GO:0005524
Gso17g0329 585 Gene3D Transferase(Phosphotransferase) domain 1 339 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0329 Gso-Chr17 2969418 2974370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0329 99 537 Trihelix Transcription Factor Family AT1G70460 40.535 4.15e-93 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gso17g0329 Pkinase 4.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0329 - - gmx:100793499 1147.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0329 17 2969418 2974370 Gso17g0329 17 2969418 2974370 ECH
Gso7g1976 7 43728506 43733432 Gso17g0329 17 2969418 2974370 GST
Gso17g0329 17 2969418 2974370 Gso15g1552 15 20734896 20740277 PCT
Gso17g0329 17 2969418 2974370 Gso9g0683 9 9470838 9476212 PCT
Gso15g1552 15 20734896 20740277 Gso17g0329 17 2969418 2974370 PCT
Gso9g0683 9 9470838 9476212 Gso17g0329 17 2969418 2974370 PCT