Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0321 ATGGCTGAGACCACAAAATACATTCCCAACTCACAATTAGAGCTTGAAGAGATATTGAATGAAGCAGAACATCGATGGCTTCGACCTGCTGAAATATGTGAGATACTTCGCAATCATAAGAAGTTTAAATTAACACCAGATCCACCTGTTATGCCTCCAGCTGGATCACTATTCTTGTTTGATCGAAAAGCACTTCGTTACTTTCGCAAGGATGGTCACCGGTGGAGGAAGAAAAAAGATGGGAAGACTGTAAGAGAAGCTCATGAAAAGTTGAAGGCTGGTAGTGTGGATGTCTTGCATTGTTACTATGCTCATGGTGAGGATAATGAATACTTCCAACGGAGAAGTTATTGGATGCTTGACGAGCAGTTAGAGCACATTGTCCTTGTGCATTATCGTGAAATTAAAGAGGGCTGCAAGTCTGGCATCTCACATTTGCCTGTAGTTCCAGTAACCCTGGTTGGTAGTTCTCAAAATACTTCAGTGCTTTCCTCTACCAAAATAAATTCACCAATATCTCTAGTTCAGACATCTTTCACATCAAGTGCAAATAAAGTTTATCAGAATGGACGAGCCTCAGAGCATGAGGATGTCAATTCAAAGAATGGTCCTCAAGCCTCCTCTCATGCTCAGCCTATCAGCAATTATGTACTTCACAGTGCACCTTGGCTTACACATGAAGCTGCAGGGTTTTCTGAGTTGTTAAGGAACCCCTTGATTTCATCATGGCCATCTTCTTTCCCTAGCTACTCTCCTGGTACTGGCTTGTCTCCCTGGACCTCAATTCAGAACTCTAGCAGAAACACAATTAATATGCATGATGGAAAGCATCATGTTGAAGCCTCTGAAGCAGACTTAACTGTTCGTAAGCTAAGCAATGCTGGGTTAGATTCTGTTCACCGAATGCAAGATGGTGTAATTTTCAGAGATAGGCTCATCACTGACATGTGCGTCCAGCCAGTTATAGATTTGCCTACTGTTAATCAGGTGAAAAACGAGCATGGTCTGGATTCATTTCATGCTCAAGTCCATGATCATAATGATCATCCAGTTGTTGCAACTACTAAAATCCTAGTTGAACAAAAACTTCAAGATGGTGGTTTATACAATGATGAATCAGAACAAGTTGAATATGGAGAAATGAAGAAACTTGATAGTTTTGGAAGGTGGATGGATAAGGAAATTGGTGGAGACTGTGATAATTCCTTGATGGCTTCAGATTCTGGTAATTATTGGAGCACACTTGATGCTCATAGTGAGGATAAGGAGGTATCTAGTTTACGCCACATGCAGTTGGATGTGGATTCATTAGGTCCTTCTCTTTCCCAAGAACAACTATTTAGTATCCATGACTTTTCTCCTGATTGGGCATATACTGGAGTTAGAACAAAGGTTTTAATAGTTGGCACATTTCTGGGGAGTAAAAAGCCCTCTAGTGAGACCAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCAGCTGAAGTTTTGGCGGATAATGTCATAAGGTGTCAGACTCCTTTGCATTCACCTGGACGTGTACCATTCTATATTACCTGCAGTAATAGGTTAGCCTGCAGTGAGGTCAGGGAATTTGAATTTGATGAAAATCCAACCAAATTTTTAGGTCCTGAGGGTATTAAAATCTCACCAGAAGAAGAGGTACGACTTCAAATGCGACTTCTTAAACTAGTAGACTTGGGACCTGACAATAAGTGGTTGAAGTGCTCCGTTTCAGAATGCGAAAAATGTAAACTCAAGGGAACAATGTATTCCGTGAGAGATGATAGTGGAGTATTTGAAGAAACTTTCCAGATTGATGGAATTGGTCATATAAACCATAGAGATATATTATTTCAGAGATTAGTGAGAGACAAGCTTTATGAGTGGTTGATATATAAGGTTCATGAAGGAGGAAAAGGACCACATGTGTTGGATGATGAAGGACAAGGAGTAATACATTTGGCAGCGGCACTTGGTTATGTGTGGGCTATGGCCCCATTAGTTGCAGCTGGTATCAGTCCTAACTTCAGAGACTCTCGTGGAAGAACAGGACTTCACTGGGCATCATATTTTGGGAGAGAAGAAACTGTTATTGTGCTAGTTCAGTTAGGTGCAACCCCAGGTGCTGTTGAGGATCCGACATCAGCATTTCCTCGAGGACAAACGGCAGCTGATTTAGGTTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCAGAGGCAGATCTGACAAATCAATTATCTGTATTGACTGTCAAGGAAAATGAAACTGGCAACATTGCCACAACAATAGCAGCTAACAGTGCTCTTCAGTCTGTTGAAGATGACTCATCTAGTATGACAATGGATGAGCAACATTATCTCAAAGAGTCACTTGCTGTGTTTCAAAAATCAGCTCATGCAGCTGCTTCAATCCTAGCAGCCTTTAGAGCAAGGTCATTCTGTCAGAGACAATTAGCCCAAAGTAGCAGTGATATTTCTGAAGTACTTGACGTAGTTGCTGATTCTTTGAGCAAGGTACAGAACAAGGGTCACTTTGAGGATTATTTACATTTTGCAGCTTTAAAGATTCAAAAGAGATATCGGGGATGGAAAGGAAGAAAGGATTTTTTGAAGATACGTGACCGCATTGTAAAAATCCAGGCTCATATTAGAGGACACCAAGTTCGTAAGCAGTACAAAAAAGTTGTGTGGTCTGTTAGCATTGTGGAAAAAGCAATCCTGCGCTGGAGACGGAAAGGGGCTGGTCTGCGAGGATTCCGGGTTGGGCAGCCAGTTGGTGTTGTGGTTAAAGATGCCGAGAAAAGTGACGAGTATGAATTTCTTAGCATTGGGAGGAGACAAAAATCAGATGATGTAAAGAAAGCTCTAGATAGAGTCAAGTCCATGGTTCGTAACCCAGAGGCAAGGGATCAGTATATGAGGCTCATCATGAAATATGAAAAGTTTAAGATTGATGATGGAGGAAGCAGTCAATCACAGCATGTCGGTTAG 3000 0.4143 MAETTKYIPNSQLELEEILNEAEHRWLRPAEICEILRNHKKFKLTPDPPVMPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNEYFQRRSYWMLDEQLEHIVLVHYREIKEGCKSGISHLPVVPVTLVGSSQNTSVLSSTKINSPISLVQTSFTSSANKVYQNGRASEHEDVNSKNGPQASSHAQPISNYVLHSAPWLTHEAAGFSELLRNPLISSWPSSFPSYSPGTGLSPWTSIQNSSRNTINMHDGKHHVEASEADLTVRKLSNAGLDSVHRMQDGVIFRDRLITDMCVQPVIDLPTVNQVKNEHGLDSFHAQVHDHNDHPVVATTKILVEQKLQDGGLYNDESEQVEYGEMKKLDSFGRWMDKEIGGDCDNSLMASDSGNYWSTLDAHSEDKEVSSLRHMQLDVDSLGPSLSQEQLFSIHDFSPDWAYTGVRTKVLIVGTFLGSKKPSSETKWGCMFGEIEVSAEVLADNVIRCQTPLHSPGRVPFYITCSNRLACSEVREFEFDENPTKFLGPEGIKISPEEEVRLQMRLLKLVDLGPDNKWLKCSVSECEKCKLKGTMYSVRDDSGVFEETFQIDGIGHINHRDILFQRLVRDKLYEWLIYKVHEGGKGPHVLDDEGQGVIHLAAALGYVWAMAPLVAAGISPNFRDSRGRTGLHWASYFGREETVIVLVQLGATPGAVEDPTSAFPRGQTAADLGSSRGHKGIAGYLAEADLTNQLSVLTVKENETGNIATTIAANSALQSVEDDSSSMTMDEQHYLKESLAVFQKSAHAAASILAAFRARSFCQRQLAQSSSDISEVLDVVADSLSKVQNKGHFEDYLHFAALKIQKRYRGWKGRKDFLKIRDRIVKIQAHIRGHQVRKQYKKVVWSVSIVEKAILRWRRKGAGLRGFRVGQPVGVVVKDAEKSDEYEFLSIGRRQKSDDVKKALDRVKSMVRNPEARDQYMRLIMKYEKFKIDDGGSSQSQHVG* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0321 999 SUPERFAMILY E set domains 449 534 IPR014756 -
Gso17g0321 999 Gene3D Immunoglobulins 442 540 IPR013783 -
Gso17g0321 999 ProSiteProfiles IQ motif profile. 875 903 IPR000048 GO:0005515
Gso17g0321 999 SMART iq_5 851 873 IPR000048 GO:0005515
Gso17g0321 999 SMART iq_5 874 896 IPR000048 GO:0005515
Gso17g0321 999 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 977 - -
Gso17g0321 999 Pfam IPT/TIG domain 449 525 IPR002909 -
Gso17g0321 999 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Gso17g0321 999 MobiDBLite consensus disorder prediction 188 210 - -
Gso17g0321 999 Pfam IQ calmodulin-binding motif 855 872 IPR000048 GO:0005515
Gso17g0321 999 Pfam IQ calmodulin-binding motif 877 896 IPR000048 GO:0005515
Gso17g0321 999 Gene3D - 622 853 IPR036770 -
Gso17g0321 999 ProSiteProfiles Ankyrin repeat region circular profile. 681 706 - -
Gso17g0321 999 CDD IPT_PCSR 448 515 - -
Gso17g0321 999 SUPERFAMILY Ankyrin repeat 634 743 IPR036770 -
Gso17g0321 999 ProSiteProfiles Ankyrin repeat profile. 681 713 IPR002110 GO:0005515
Gso17g0321 999 ProSiteProfiles IQ motif profile. 852 881 IPR000048 GO:0005515
Gso17g0321 999 Gene3D - 854 899 - -
Gso17g0321 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 848 902 IPR027417 -
Gso17g0321 999 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Gso17g0321 999 SMART CG_1_2 18 136 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0321 Gso-Chr17 2878772 2887043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0321 119 995 CAMTA Transcription Factor Family AT5G09410 36.471 3.09e-161 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gso17g0321 CG-1 2.3e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0321 K21596 - gmx:100818336 2008.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0321 17 2878772 2887043 Gso17g0321 17 2878772 2887043 ECH