Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0315 ATGGTAGCGGAAGCGGAAATTATCTGTCAGCAGAACATTCCGATGTTGGACGTGAAGTATCATATTTGCGTGGCTCAAGAACACAACGTGAAGGTTGAGGTTTCACCCAAATCACCTTCACCTCCTGTTCCGATCTTTGGCCAAGCAGTGAGTTGCTCTGAGATCATTAAAGATTCCATTTTGGAGGCCCCTGCGATGAATTTTTTCCCAAATGTGCGTTCTGGTAGCTATGCCGAGATTGGACCGCGCGTTTCTATGGATGATGAACACATTTGTATTGATGATCTGGGAGCTCATCTTGGATTTGTGTTCAAGTGTCCGATACCGAGTGCATTTTATGCAGTTTTTGATGGCCATGGGGGGCCTGATGCAGCAGCCTTTGTTAAGAGGAATGCTATGAGGTTGTTTTTTGAAGATGCAGACATGCTGCAGTCGTATGATGCTGATGCGTTTTTTCTACAGAAATTGGAGGATTCCCATCGGAGAGCTTTTCTACGGGCAGATCTTGCCTTGGCTGATGAACAAACTGTTGGTAGTTCTTGTGGGACTACTGCATTGACTGCCCTTGTGCTTGGAAGGCATTTGCTTGTTGCTAATGCTGGTGACTGCCGAGCAGTTCTTTGCCGGAGAGGTGTGGCTGTTGAGATGTCTAATGATCACAGGCCAAGTTATCTACCAGAGAAGAGGAGGGTGGAGGAGTTAGGTGGGTTCATTGATGATGGATATCTCAATGGTTATCTTTCAGTAACTCGAGCCCTTGGGGATTGGGACTTGAAATTTCCACTTGGTGCTGCATCCCCTCTTATTGCTGAGCCAGATGTTCGGCTGGTTACATTGACTGAGGGTGATGAGTTCTTGATCATTGGGTGTGATGGGATTTGGGATGTAATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGCCGAGGATTAAGAAGGCATGATGACCCACAGCAATGTGCCGGAGAGCTAGTCAAGGAAGCATTGCGCCTAAATACATCAGATAATCTCACTGTAATTGTTGTATGCTTGTCGCCCATTGAAAGCATTGTTGAATCATGTCCACCCCAAAGGAGAAGATTCAAAGCTTGCAGTTTGTCTGAAGAGGCCCGTAATAGATTGAAGAGCTTGATTGAGGGAAATTGA 1143 0.4602 MVAEAEIICQQNIPMLDVKYHICVAQEHNVKVEVSPKSPSPPVPIFGQAVSCSEIIKDSILEAPAMNFFPNVRSGSYAEIGPRVSMDDEHICIDDLGAHLGFVFKCPIPSAFYAVFDGHGGPDAAAFVKRNAMRLFFEDADMLQSYDADAFFLQKLEDSHRRAFLRADLALADEQTVGSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGVAVEMSNDHRPSYLPEKRRVEELGGFIDDGYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVRLVTLTEGDEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHDDPQQCAGELVKEALRLNTSDNLTVIVVCLSPIESIVESCPPQRRRFKACSLSEEARNRLKSLIEGN* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0315 380 PANTHER PROTEIN PHOSPHATASE 2C 1 367 IPR015655 GO:0004722|GO:0006470
Gso17g0315 380 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169
Gso17g0315 380 CDD PP2Cc 72 343 IPR001932 -
Gso17g0315 380 SUPERFAMILY PP2C-like 68 345 IPR036457 -
Gso17g0315 380 Pfam Protein phosphatase 2C 83 335 IPR001932 -
Gso17g0315 380 ProSiteProfiles PPM-type phosphatase domain profile. 73 343 IPR001932 -
Gso17g0315 380 SMART PP2C_4 63 341 IPR001932 -
Gso17g0315 380 Gene3D - 64 346 IPR036457 -
Gso17g0315 380 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 367 - -
Gso17g0315 380 SMART PP2C_SIG_2 88 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0315 Gso-Chr17 2810769 2813215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0315 1 379 PP2C-type Phosphatase Gene Family AT1G48040 57.692 8.14e-149 424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0315 17 2810769 2813215 Gso17g0315 17 2810769 2813215 ECH
Gso7g1989 7 43923955 43926589 Gso17g0315 17 2810769 2813215 GST
Gso17g0315 17 2810769 2813215 Gso9g0272 9 2576210 2578743 PCT
Gso9g0272 9 2576210 2578743 Gso17g0315 17 2810769 2813215 PCT