Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0310 ATGGATGAAAAAGGAGCAAGAAGTAGCAACACCCTTTTAAGTTGTGAGGACGAGATGGACCTTCGAAGAGGCCCTTGGACCGTCGATGAAGACCTCACTCTTATCAATTACATTGCCACTCATGGCGAAGGTCGCTGGAACACGCTCGCCCTCTCTGCTGGGCTGAAACGAACGGGGAAGAGTTGCAGATTGAGGTGGCTGAATTATCTGCGTCCTGATGTTCGACGTGGAAACATCACACTTGAAGAACAACTTTTGATTCTGGAGCTTCATTCTCGCTGGGGAAACCGTTGGTCGAAAATTGCTCAATATTTGCCTGGTAGAACCGACAACGAGATAAAGAACTATTGGAGAACCCGTGTCCAAAAGCATGCCAAGCAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGTTACCTTTGGATGCCAAGGCTCGTGGAACGCATTCAAGCAGCGGCGACGGCCCCCGTAACCACCACCGTAACTGCGGCCGCCACCAACAATGCATTCACCTACGGAAACAACCTTAATAACAACAAATTCGAGGTTCTGAATCACAAGGGCAGAATGGGGTTAACCGATCCTTCAGTTGCGAACAATGACTTTGTGGGTTCACATGTCACGCAAAGTTACACTACTCCTGAGAATAGTAGCACGGGTGCGTCATCATCAGACTCGTTTGGGACTCAAGTCTCAACAATTTCTGATTTGACTGAATATTACAGTGTCCCTGAAAATACTAATTCTGCGGATTATTATCAACCCTCTCAAATTAGTAATTACTCGGATAATTGCATCACAAGCCCATCTGGGTTCTTGTTCCCTCAAGGACTAGATCTTCAATCCATGGATCCAAACACACCGTGGAACATGCAAAGTGGGGACTCCTCTGACAATTTTTGGGACGTTGAAAGCATGTTATTCTTAGAGCAGCAACTCATGAATGACAACATGTGA 969 0.4634 MDEKGARSSNTLLSCEDEMDLRRGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAATAPVTTTVTAAATNNAFTYGNNLNNNKFEVLNHKGRMGLTDPSVANNDFVGSHVTQSYTTPENSSTGASSSDSFGTQVSTISDLTEYYSVPENTNSADYYQPSQISNYSDNCITSPSGFLFPQGLDLQSMDPNTPWNMQSGDSSDNFWDVESMLFLEQQLMNDNM* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0310 322 CDD SANT 96 119 IPR001005 -
Gso17g0310 322 SMART sant 75 123 IPR001005 -
Gso17g0310 322 SMART sant 22 72 IPR001005 -
Gso17g0310 322 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Gso17g0310 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Gso17g0310 322 Gene3D - 20 76 - -
Gso17g0310 322 PANTHER MYB TRANSCRIPTION FACTOR 1 317 - -
Gso17g0310 322 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Gso17g0310 322 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Gso17g0310 322 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Gso17g0310 322 MobiDBLite consensus disorder prediction 211 232 - -
Gso17g0310 322 Gene3D - 80 143 - -
Gso17g0310 322 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Gso17g0310 322 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 317 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso17g0310 322 CDD SANT 25 70 IPR001005 -
Gso17g0310 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0310 Gso-Chr17 2752788 2755283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0310 1 313 MYB Transcription Factor Family AT3G06490 54.655 1.69e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso17g0310 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0310 K09422 - gmx:778183 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0310 17 2752788 2755283 Gso17g0310 17 2752788 2755283 ECH