Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0292 ATGAGCTACCACAACGCGCGCCAGAGCCCCGGGGGATTCCGCTCCGGCGCTGCTCCGCACCACCGCGCCTTCGATAGTCCCCCGCATCGCTCTCCCGGCAGGGGCGGAGGATTCCGGCCGATGGGCGCCGAGGGTCCCGCGGAATTCGGATTCAACGGCCACCAGGCGCCACCGCCGCTCGCTGGCCAGAAACGAGGGTTTCCTTTCTCCGGACGCGGTGGTGGTTCGCCCGATCGTTTAGATGGTGGAAGTTTTGCCAAACTTTTTGTCGGATCTGTTCCCCGAACAGCCTCTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAACGTGATTGAGGTTGCCCTCATCAAAGATAAAAAGACAGGACAGCATCAAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAGCATACTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGCGATATGCTGATGGTGAACGGGAACGCCTCGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTTAAATACTCACACAGAGATATGGCTCTGGCAGCAATTAATGCGCTTAATGGAATCTACACAATGAGAGGTTGTGAGCAGCCACTTATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCTTGCTTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCACAAGACATCCATCCAATATTACGGATCCTATTGGTGATCGTATGCCTCCCCCTAATGCTTGGCGTCCCATGCATCCGCCAAATGTGGGGCCACCTTCTAATGCTGGTCTTCAGGGCATGGGGCCACCGTTGATTTCAAGATCTGGTGACATGGCATTGCCTACAAATGCGGGCGGTCCTATGACTAGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCGATGTCACAACAGAAACCTGTTCAGTCATCCCAGGAACTGCCACATTCCCACCAGTTATACCCTCAAGCACCAGTTCCCTATCCACAAACATCTCTTAGGCAGCATGCCCAGCCACAACTTCCTCTTCCATCTCAGCAGGTACATGGAGTAAGTGGACAGTTTCCAACTTCTCAGCCCCAAACTCAACAGAGTGCTTTGTCTGCTGCAATTCCTCAGACCAATCTTGAAACCGGCATGCAATCTAATGCTGCACTAACTACTCCAAATCAACAGCAAGTTCCTCCCTCTGTGCAGCAGCAGCCACTTCAGCAATCCCCTTCTCCGTTAGCTCAGATGTTGTCACAACAAACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAAATGATGCAACCTTCTAGTCAAGCATTAACATTCCAGCAAAATGCAGAAGCTACCAAAAAGCAGTCTCAATGGGCTGGGCCTGGGACTGCTGTAGCACAAGCAGTGGCCAGCACTCGTGCAGCTGCACCTGCTGCAGATGTGCCTTCATCCACACCTGCTAATTCTGCCTTACCAGCAATAAACCAGAACATGGCTCTTGTCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGGTATTATATGAACAGAAAAAGCAACAGCAAAGGCCATCTGTTCAGCAGTCTCAAACTCAGTCACAACCTTCAATACTACCTGCCCAGCAAGTTCCCCAAATCCAACATGTTCAGCCCCAAAGTCATCTCCAAGGACAAGTTCTCCACCAGCAACAAATACAGCATCCTTCTTCTTTGTCTTCTTCGTTCCAGGCATATGGAGTTACGGGCCCTCAAAATGTTCAGGAAGTGGGATATAAACAGTTACAGGCATCGGTTATTTCTGCTGGTGATCCAGGACGCTACTCACAGGGTATTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTGCAGGAGTTTGA 2142 0.4916 MSYHNARQSPGGFRSGAAPHHRAFDSPPHRSPGRGGGFRPMGAEGPAEFGFNGHQAPPPLAGQKRGFPFSGRGGGSPDRLDGGSFAKLFVGSVPRTASEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGLAFGGPGFGPRFDAPGTRHPSNITDPIGDRMPPPNAWRPMHPPNVGPPSNAGLQGMGPPLISRSGDMALPTNAGGPMTSLGGPIDGRFQVQSMPMSQQKPVQSSQELPHSHQLYPQAPVPYPQTSLRQHAQPQLPLPSQQVHGVSGQFPTSQPQTQQSALSAAIPQTNLETGMQSNAALTTPNQQQVPPSVQQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTFQQNAEATKKQSQWAGPGTAVAQAVASTRAAAPAADVPSSTPANSALPAINQNMALVKCNWTEHISPEGFKYYYNSVTGESRWEKPEELVLYEQKKQQQRPSVQQSQTQSQPSILPAQQVPQIQHVQPQSHLQGQVLHQQQIQHPSSLSSSFQAYGVTGPQNVQEVGYKQLQASVISAGDPGRYSQGIHSTQELMWKNKPAGV* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0292 713 CDD RRM2_FCA 178 257 IPR034645 -
Gso17g0292 713 ProSiteProfiles WW/rsp5/WWP domain profile. 571 598 IPR001202 GO:0005515
Gso17g0292 713 ProSitePatterns WW/rsp5/WWP domain signature. 571 596 IPR001202 GO:0005515
Gso17g0292 713 Gene3D - 567 614 - -
Gso17g0292 713 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 33 640 - -
Gso17g0292 713 MobiDBLite consensus disorder prediction 257 294 - -
Gso17g0292 713 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 257 IPR000504 GO:0003723
Gso17g0292 713 CDD WW 568 598 IPR001202 GO:0005515
Gso17g0292 713 Gene3D - 173 265 IPR012677 -
Gso17g0292 713 SUPERFAMILY RNA-binding domain, RBD 177 280 IPR035979 GO:0003676
Gso17g0292 713 PANTHER RNA BINDING PROTEIN 33 640 - -
Gso17g0292 713 MobiDBLite consensus disorder prediction 448 477 - -
Gso17g0292 713 MobiDBLite consensus disorder prediction 1 81 - -
Gso17g0292 713 MobiDBLite consensus disorder prediction 605 625 - -
Gso17g0292 713 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 167 IPR000504 GO:0003723
Gso17g0292 713 SUPERFAMILY RNA-binding domain, RBD 72 171 IPR035979 GO:0003676
Gso17g0292 713 MobiDBLite consensus disorder prediction 604 625 - -
Gso17g0292 713 Gene3D - 83 172 IPR012677 -
Gso17g0292 713 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 246 IPR000504 GO:0003723
Gso17g0292 713 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 151 IPR000504 GO:0003723
Gso17g0292 713 SMART ww_5 566 598 IPR001202 GO:0005515
Gso17g0292 713 SMART rrm1_1 87 163 IPR000504 GO:0003723
Gso17g0292 713 SMART rrm1_1 178 253 IPR000504 GO:0003723
Gso17g0292 713 MobiDBLite consensus disorder prediction 339 428 - -
Gso17g0292 713 SUPERFAMILY WW domain 570 603 IPR036020 GO:0005515
Gso17g0292 713 Pfam WW domain 569 596 IPR001202 GO:0005515
Gso17g0292 713 MobiDBLite consensus disorder prediction 357 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0292 Gso-Chr17 2611764 2621817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0292 84 268 Eukaryotic Initiation Factors Gene Family AT1G71770 25.373 4.87e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0292 - - gmx:100786792 1245.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0292 17 2611764 2621817 Gso17g0292 17 2611764 2621817 ECH
Gso7g2010 7 44123829 44133938 Gso17g0292 17 2611764 2621817 GST