LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso17g0291	ATGGAGGAGAAGAGAGAGAAAGAGAAAAACTCAAAGTCATCATCATCTACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCTAACATGAGCATGAGCTTCCCTTTCTCCCCTGCTTTCTCTAGTAGCATCTTTGACATGATGCCACCACCACCACCTTCCTCATCTCACGATCCTAAAGCTCCCAACTTTGCTAATAGCTTCATGGACTTGCTCGCTGTCCCTGCTGATTATTATACCCCTTCTTTATTCGACTGGTCCCAAAACACCGCCCCCACGTCAGCACCACCACCTTCCACCACCCAAATCAACCACCCTCTTCCGTCGCCAGCCAGCTCCAATGTCCCCGACGGCTCCGAGGTTCTCAACACTCCGGCGTCTCCCAATTCTTCGTCTATTTCATCATCGTCCAACGAAGCAGCAGCCGCCACCACCGCCAACAAAACAACGGGAAATGATAATGAAGAGGAGGAAGATGAAACAGCAATAGATGCAACAGCAGGCAGAGAAGAAGAAGATCATCAAGACCAAGACAAGACTAAGAAACAGCTCAAGCCAAAAAAGAAGAACCAAAAAAAGCAAAGAGAGCCGAGATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGATGGCGCAAGTACGGTCAAAAAGCCGTCAAAAACAGCCCTCATCCAAGGAGCTATTATCGTTGCACCACCGCGACATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGATCCTACGGTGGTGGTGACAACCTACGAGGGGCAACACACTCACCCGTGTCCTGCCACGTCACGGGCTAGCTTCGGGTTCATGCACTCCGAAGCAAGTGGGTTCGGACCCACCAGTGGACTAGGTTCGGCACACTTTATGCTGCAACAACAACAACAGTTTCGGGACCAAGCACAAGCACAAGCAGCAATGTTGTATAACTCCACCTCATCGTCATTGTCATTGCCACTGAATGTTGTTAACTCAGCTTCTTGTGTTAATAATAGCTATGCCAATACGTCATCGTTGAGTGGCTTTCTTCAGGGCCAAGAGAATCATCAGCGAGGTTTTGTGCCGTCTAGGGTGGTGGCTCCTCATATTTTCTTGAGGGACAATGGGCTTCTTCAGGACATTGTTCCAACGCAGATGGGGAATGAGGAGAATGAAGATCGTGTATACTTATGGTGGCAGAGACTTAATGTGGGAAAGGGAAAGTCAAGAATATAA	1245	0.4908	MEEKREKEKNSKSSSSTMANSVAFSDEIPNMSMSFPFSPAFSSSIFDMMPPPPPSSSHDPKAPNFANSFMDLLAVPADYYTPSLFDWSQNTAPTSAPPPSTTQINHPLPSPASSNVPDGSEVLNTPASPNSSSISSSSNEAAAATTANKTTGNDNEEEEDETAIDATAGREEEDHQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTATCGVKKRVERSSEDPTVVVTTYEGQHTHPCPATSRASFGFMHSEASGFGPTSGLGSAHFMLQQQQQFRDQAQAQAAMLYNSTSSSLSLPLNVVNSASCVNNSYANTSSLSGFLQGQENHQRGFVPSRVVAPHIFLRDNGLLQDIVPTQMGNEENEDRVYLWWQRLNVGKGKSRI*	415

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso17g0291	414	Pfam	WRKY DNA -binding domain	212	269	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gso17g0291	414	SUPERFAMILY	WRKY DNA-binding domain	203	271	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gso17g0291	414	MobiDBLite	consensus disorder prediction	168	184	-	-
	Gso17g0291	414	Coils	Coil	414	414	-	-
	Gso17g0291	414	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	66	387	IPR044810	GO:0003700
	Gso17g0291	414	MobiDBLite	consensus disorder prediction	83	99	-	-
	Gso17g0291	414	MobiDBLite	consensus disorder prediction	83	200	-	-
	Gso17g0291	414	Gene3D	WRKY domain	195	272	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gso17g0291	414	MobiDBLite	consensus disorder prediction	106	151	-	-
	Gso17g0291	414	ProSiteProfiles	WRKY domain profile.	206	271	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gso17g0291	414	SMART	WRKY_cls	211	270	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gso17g0291	414	PANTHER	WRKY TRANSCRIPTION FACTOR 48-RELATED	66	387	-	-
	Gso17g0291	414	MobiDBLite	consensus disorder prediction	46	65	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso17g0291	Gso-Chr17	2600634	2603731	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso17g0291	98	393	WRKY Transcription Factor Family	AT2G47260	45.638	4.47e-58	191

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gso17g0291		WRKY	2.4e-26	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso17g0291	17	2600634	2603731	Gso17g0291	17	2600634	2603731	ECH
	Gso7g2011	7	44139202	44142197	Gso17g0291	17	2600634	2603731	GST
	Gso15g1162	15	11363742	11366578	Gso17g0291	17	2600634	2603731	PCT
	Gso9g0294	9	2810224	2812424	Gso17g0291	17	2600634	2603731	PCT