Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0288 ATGGCACCTGAAAACCCTTCAACGCCAGATCCCGAATCGCCAACCTCTCCTTCCGTTGGTTTCAACACCGACCAGCTTCCTCACACCCACACCAGCCATGCCTCCCAAGACGACGAGGCTTCCGTCGATCCCGATATCGTACGAGACGACATTGAAGAACAGCCCGAGGAAGAAGAAGAAGATGGAGAGGATCTTTACAATGACAATTTTTTGGATGATTATAAGAGAATGGATGAGGCTGACCAGTTCGAATCGTTCGGGCTGGACGACTCGTTGGAAGACGACAGAGATTTTGATCAGATCATGCAAGATCGAAGGGCTGCGGAGGTTGAACTCGAGGCGCGCGATGGTCGCGCTTCCAATCGTAACAAGCTTCCCCAGCTTCTCCACGACCAGGATACAGATGATGACAATCACAGGTCTTCTAAAAGGGCTCGAGCTGATTTTAGACCTTCTGTAGCAAGTGATGATGACTTTGATGGTATGCAAAGTTCACCTGGAAGGTCACAACGGCACTCAAGAGAGGATATTCTTATGACTGATCAAACGGAGGATGATCGAGATGACGATGATTTTGATGATGGATACGAGATGTATCATGTTCAAGGTACACTTAGAGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCCAGGAAATTCAAGGACTTCTTACTTACTTATCTTAATCCAAAAAATGAACATCGGGACAAGGAATATGTCTGGCTGATAAATGAGATGGTGTCAGCTAGTAAGTGCAGTTTGGAGATAGATTACAAACAATTTATCTATGTTCATCCCAACATTGCCATTTGGCTAGCTGATGCCCCTCAATCTGTCTTAGAAGTAATGGAAGATGTTACGAAAAATGTTGTCTTTGAATTACATCCAAATTACAGGAATATACACCAAAAGATTTATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAGGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACGTTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAATGCGGGGCAATTTTGGGGCCTTTTTTTCAGAATTCATATTCAGAGGTGAAAGTGGGATCCTGTCCTGAGTGTCAATCAAAAGGACCGTTCACTGTCAATATTGAACAGACAATTTATAGGAATTTTCAGAAGCTTACCCTCCAAGAGAGTCCAGGGATAGTTCCTGCAGGTCGACTTCCAAGATACAAGGAAGTGATACTATTAAATGATCTGATTGATTGTGCACGCCCTGGAGAAGAAATTGAGGTCACAGGTGTTTATACCAATAATTTTGACTTATCCTTAAACACAAAAAATGGGTTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATTATGTTACGAAAAAGCAAGACCTTTTTTCTGCCTACAAACTTACACAGGAAGACATAGAAGAGATTGAAAATTTGGCTAAAGACCCTCGAATTGGAGAAAGGATTGTTAAGTCTATTGCTCCATCAATCTATGGTCATGATGACATAAAAACTGCAATAGCTTTAGCTATGTTTGGAGGTCAAGAAAAAAACGTGGAAGGAAAGCACCGCCTGCGGGGAGACATAAATGTTCTTCTTCTGGGTGATCCAGGGACAGCGAAGTCTCAGTTTCTCAAGTATGTTGAGAAAACTGGACAGAGAGCTGTATACACTACTGGTAAAGGGGCTTCTGCCGTGGGTCTTACAGCTGCCGTTCATAAGGATCCAGTCACAAGGGAGTGGACTCTTGAAGGGGGAGCACTTGTTCTAGCTGACAAAGGAATTTGTCTTATTGATGAGTTTGACAAGATGAATGATCAGGATAGGGTGAGTATCCATGAAGCCATGGAGCAGCAGAGTATAAGCATATCAAAAGCTGGAATTGTTACATCTCTTCAGGCACGCTGCTCTGTTATTGCTGCTGCAAATCCTGTTGGAGGAAGATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAATTATTTCTCGTTTTGATATCCTCTGTGTTGTGAAGGATGTTGTTGATCCAGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCCAAGCAAGATGATAAGTCCTTTAGTGAGTTCCAAGATATCCATGCATCTGCCATGCCAGCTGATCCAGAGATACTTCCTCAACAGCTACTGAAGAAGTACATTACATATGCCAAGTTGAATATTTTTCCAAGGTTACAAGATGCTGATATGGATAAACTGTCACATGTCTATGCCGAACTGCGGAGGGAATCTTCACACGGACAAGGAGTCCCTATTGCTGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCACATGCGAGAATGCATCTCAGGCAACATGTTACACAAGAGGATGTAGACATGGCAATTCGTGTTCTACTTGAATCATTCATTTCAACTCAAAAATTTGGGGTGCAGAAGGCTCTTCAGAAGAGCTTTAGAAAGTATATGACTTTCAAAAAGGACTACAATGAACTGCTCCTTTATATTCTTCGCGAGCTTGTAAAGAATGCTCTGCATTTTGAAGAAATTGTCACCGGATCTGCTTCTGGTCTAACTCACATAGATGTCAAAGTAGATGATCTCTACCACAAGGCTCAAGAGCATGATATTTATGATCTGAAACCATTCTTCAATAGCAGCCACTTTTCAAGGGCCAATTTTGTATTGGATGAAGAACGGAGAGTGATCAGACATCACCTTACCAGATGA 2808 0.4252 MAPENPSTPDPESPTSPSVGFNTDQLPHTHTSHASQDDEASVDPDIVRDDIEEQPEEEEEDGEDLYNDNFLDDYKRMDEADQFESFGLDDSLEDDRDFDQIMQDRRAAEVELEARDGRASNRNKLPQLLHDQDTDDDNHRSSKRARADFRPSVASDDDFDGMQSSPGRSQRHSREDILMTDQTEDDRDDDDFDDGYEMYHVQGTLREWVTRDEVRRFIARKFKDFLLTYLNPKNEHRDKEYVWLINEMVSASKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVTKNVVFELHPNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDIEEIENLAKDPRIGERIVKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDPVTDEMLATFVVDSHFKSQPKGAKQDDKSFSEFQDIHASAMPADPEILPQQLLKKYITYAKLNIFPRLQDADMDKLSHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLESFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYILRELVKNALHFEEIVTGSASGLTHIDVKVDDLYHKAQEHDIYDLKPFFNSSHFSRANFVLDEERRVIRHHLTR* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0288 935 Pfam MCM N-terminal domain 220 313 IPR027925 -
Gso17g0288 935 PANTHER DNA HELICASE 138 924 - -
Gso17g0288 935 MobiDBLite consensus disorder prediction 85 104 - -
Gso17g0288 935 Gene3D - 347 397 - -
Gso17g0288 935 Pfam Mini-chromosome maintenance protein 2 37 176 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Gso17g0288 935 Pfam MCM AAA-lid domain 746 829 IPR041562 -
Gso17g0288 935 ProSitePatterns MCM family signature. 608 616 IPR018525 GO:0003677|GO:0005524|GO:0006260
Gso17g0288 935 MobiDBLite consensus disorder prediction 128 155 - -
Gso17g0288 935 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 329 346 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Gso17g0288 935 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 352 364 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Gso17g0288 935 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 387 401 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Gso17g0288 935 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 448 459 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Gso17g0288 935 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 463 474 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Gso17g0288 935 MobiDBLite consensus disorder prediction 14 30 - -
Gso17g0288 935 Gene3D - 212 316 - -
Gso17g0288 935 PRINTS Mini-chromosome maintenance (MCM) protein family signature 540 555 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso17g0288 935 PRINTS Mini-chromosome maintenance (MCM) protein family signature 600 614 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso17g0288 935 PRINTS Mini-chromosome maintenance (MCM) protein family signature 628 641 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso17g0288 935 PRINTS Mini-chromosome maintenance (MCM) protein family signature 652 664 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso17g0288 935 PRINTS Mini-chromosome maintenance (MCM) protein family signature 679 687 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso17g0288 935 Gene3D - 320 445 IPR012340 -
Gso17g0288 935 Pfam MCM OB domain 319 446 IPR033762 -
Gso17g0288 935 SMART mcm 316 830 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gso17g0288 935 Pfam MCM P-loop domain 486 709 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso17g0288 935 MobiDBLite consensus disorder prediction 43 67 - -
Gso17g0288 935 MobiDBLite consensus disorder prediction 1 78 - -
Gso17g0288 935 MobiDBLite consensus disorder prediction 109 193 - -
Gso17g0288 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 832 IPR027417 -
Gso17g0288 935 ProSiteProfiles MCM family domain profile. 499 705 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso17g0288 935 CDD MCM2 502 828 - -
Gso17g0288 935 Gene3D - 479 852 IPR027417 -
Gso17g0288 935 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 138 924 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gso17g0288 935 SUPERFAMILY Nucleic acid-binding proteins 221 468 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0288 Gso-Chr17 2554635 2560083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0288 1 930 Core DNA Replication Machinery Family AT1G44900 75.107 0.0 1372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0288 K02540 - gmx:100813006 1813.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2013 7 44179114 44184451 Gso17g0288 17 2554635 2560083 GST