Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0283 ATGCTCCAGGCATTGATGAATCTGTTCTCGCTGTGTTGGAAGCCATTTGGCCGCGATGCTGCTGATCGAATCGATTCCATCGGAGTTACCGGAAGAGAAGGCAAAGACGGCTTGCTTTGGTTCCGCGACGGCGGAAAATATGGCTCTGGCGATTTCTCCATGGCCGTCGTTCAGGCCAACCAGGTTCTCGAAGACCAGAGCCAGATCGAGTCTGGTCCTCTCGGCACCTTCGTCGGCATCTACGACGGTCACGGAGGACCCGACGCCTCAAGATACGTTTGCGATCACTTGTTTCGCCATTTTCAAGCAATATCGGCTGAGTCACGCGGGGTTGTGACACCTGAGACAATCGAAAGAGCGTTTCGCCAAACAGAAGAGGGGTACACAGCCCTCGTGTCAGGCTCATGGAATGCTCGACCTCAAATTGTAAGTGCTGGGACCTGTTGTCTAGTTGGAGTGATATTTCAGCAGACACTCTTTGTGGCAAACGCTGGAGATTCCCGTGTTGTATTGGGCAAGAAAGTTGGTAACACTGGAGGTATGGCTGCAATTCAGCTGTCTGCAGAACACAATGCAAATCTTGAGGCTGTTAGACAGGAACTTAAAGAATTACACCCACATGATCCCCAAATTGTTGTCCTCAAACACGGAGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCTATAGGTGACGTATATTTGAAACATGCACAGTTTAACCGGGAACCACTTAATGCAAAATTCAGACTTCCTGAACCAATGAACATGCCCATCTTGAGTGCTAATCCCACTATTCTTTCTCATCCTCTCCAACCAAATGATTCCTTCCTTATATTCGCATCTGATGGTTTATGGGAGCACTTGAGTAATGAGAAAGCCGTGGATATTGTAAACAGCAATCCACATGCGGGTAGTGCCAAGAGACTTATCAAGGCTGCTCTACACGAAGCAGCAAGAAAACGAGAAATGCGATATTCAGACCTCCGTAAGATTGACAAGAAGGTTCGACGCCATTTTCATGATGATATATCCGTTATTGTTTTATTCTTAAATCACGACCTTATTTCCAGAGGCACAGTGCTAGACCCGGCACTTTCAATTCGAAGTGCTCTCGATCACTGA 1128 0.4716 MLQALMNLFSLCWKPFGRDAADRIDSIGVTGREGKDGLLWFRDGGKYGSGDFSMAVVQANQVLEDQSQIESGPLGTFVGIYDGHGGPDASRYVCDHLFRHFQAISAESRGVVTPETIERAFRQTEEGYTALVSGSWNARPQIVSAGTCCLVGVIFQQTLFVANAGDSRVVLGKKVGNTGGMAAIQLSAEHNANLEAVRQELKELHPHDPQIVVLKHGVWRVKGIIQVSRSIGDVYLKHAQFNREPLNAKFRLPEPMNMPILSANPTILSHPLQPNDSFLIFASDGLWEHLSNEKAVDIVNSNPHAGSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFLNHDLISRGTVLDPALSIRSALDH* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0283 375 CDD PP2Cc 52 352 IPR001932 -
Gso17g0283 375 ProSitePatterns PPM-type phosphatase domain signature. 77 85 IPR000222 GO:0043169
Gso17g0283 375 ProSiteProfiles PPM-type phosphatase domain profile. 51 352 IPR001932 -
Gso17g0283 375 PANTHER ALPHABET, ISOFORM E-RELATED 3 375 - -
Gso17g0283 375 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 375 - -
Gso17g0283 375 SUPERFAMILY PP2C-like 61 353 IPR036457 -
Gso17g0283 375 Pfam Protein phosphatase 2C 75 322 IPR001932 -
Gso17g0283 375 Gene3D - 43 360 IPR036457 -
Gso17g0283 375 SMART PP2C_4 38 350 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0283 Gso-Chr17 2522971 2527386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0283 1 372 PP2C-type Phosphatase Gene Family AT4G38520 58.793 7.47e-160 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0283 K01102 - gmx:100811922 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0283 17 2522971 2527386 Gso17g0283 17 2522971 2527386 ECH
Gso7g2017 7 44208921 44213608 Gso17g0283 17 2522971 2527386 GST
Gso17g0283 17 2522971 2527386 Gso15g1167 15 11436631 11442743 PCT
Gso17g0283 17 2522971 2527386 Gso9g0298 9 2865519 2871163 PCT
Gso15g1167 15 11436631 11442743 Gso17g0283 17 2522971 2527386 PCT
Gso9g0298 9 2865519 2871163 Gso17g0283 17 2522971 2527386 PCT