Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0274 ATGGGAACTCCACCAACGGATGAGCTTGTGAAGAAGATCCAACAGCTGGAGGAAGGACACGCGCACCTGAAGCAAGAAATGTCGAAACTAAAACTCTCCGATGTGAGACACGGCCACCATCGCCAGAGGTCGCACTCCGTCTCTCCGCAGCGTTCTAGATTGGGAGCTCCGCCGAAGAAGCGGAGCGATGCACCGGCTGCTGCGTGGAAGCGAGGTTCGTGTTCTTTTAAACAGTCGTCGCCGCTGCAGAGGGAGAGTCGCGGTGGCGGCGATCCTCAAATTCACGGCGGAGGAGAAGAAGCTGCTCCGCGCCGTGGTCCCTCCGCCGTCAATTTCACGGAACGGCAGTATCTTAATATTTTGCGGTCAATGGGACAGTCCGTTCATATATTGGATCTTAACTGTCGCATAATATACTGGAACCGTAGTGCGGAAAATCTATATGGTTATACAGCAGAGGAAGCTCTAGGACAGGATGGGATTGAGCTACTTGTAGACCCTAGGGATTTGGACTTGGCCAATAATACAGTGAATCGTGTTATGATGGGAGAGAGCTGGACAGGGCAATTTCCGGTCAAGAATAAAACAGGGGAGAAGTTTTTAGCTGTAGCGACTAATACACCTTTTTATGACGATGATGGAAGCTTAGTTGGGCTAATTTGTGTCTCTATTGATTTGCGGCCCTTTCTTGAAATGAAAGTTCCAATGCCTACTAGTGTAAGGAACATCGAGTCAGATTCAGATTCAGGTGGAACCCGACCTAGAAGTAGCATTACAAATAAACTTGGCCTTGACACTCAACAGCCGCTTCAAGCTTCTATAGCTTCGAAAATTTCAAATTTGGCATCAAAGGTGGGTAACAAAGTTAAGTCAAGGATCTGGATGGGAGAAAACAATTTGGATCGGGAAAGTGGGAGTGGTGAAAGTCATCATTCTGAGCATAGTTTGTTGGAATCTGTTTTTTTGGAGCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGCACCCCCAGAGGTGATGTGCCACCATCCCATTTTGGTGCGTTTTCTCATGTCGAAGAAAAATCCCAGGGAAAAGCTCTGAGAGAGTCTGGTGATGAGAGTGAAGGAAAATCTATTCATAAAATCATACCTAAGGCTGAAGCCTGGATTCAAAGGAAAACATTATCATGGCCGTGGAGAACAAAAGATCGAGAAGGATCAGATGCAATGAATGTTCGTGTTGCTGGGTCCTGGAGACAGAATGATCAAGAAAATGAATCAGTTAATCAGAAGATTCTTTCTTCTGGCTTGAAGCAAGAAAGCCAGGCAGGTGAAAGTAATCGCCCTACTAACAATGAGGCTTCAGGATCCTGGTCCTCCTTTAATGTTAACAGCACAAGTAGTGCCAGCAGCTGTGGGAGTGCTGGCAGTGGTGCTGTCAATAATAAAGTGGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTCTATCATGCTCTGTGGTATGGATCAGATGTTGCCGTCAAAGTTTTCTCGAAGCAAGAATATTCAGACGATGTGATACTGTCCTTCAGACAAGAGGTGTCTGTCATGAAAAGACTTCGACACCCAAATATTCTTCTCTACATGGGGGCCGTGACTTCACCTCAACGTCTATGCATTGTGACAGAGTTTCTCCCGCGTGGAAGCTTGTGCCGCTTGTTACACAGAAACACATCTAAACTTGACTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCACGAGGTGTAAATTATCTTCATCATTGTAACCCACCTATCATCCACAGAGATTTGAAGTCATCAAATCTTCTAGTTGATAAGAACTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCATGAAACATATCTCACAACTAAGACAGGAAGGGGCACGCCTCAATGGATGGCACCGGAAGTTCTTCGTAATGAACCCTCTGATGAGAAATCTGACGTTTACAGCTTTGGAGTAATATTATGGGAAATTGCAACTGAAAAGATACCTTGGGATAATCTCAACTCAATGCAGGTGATTGGAGCTGTAGGATTCATGAATCAACGGCTAGAGATTCCAAAAAATGTTGATCCACGGTGGGCTTCTATAATTGAGAGCTGCTGGCATAGTGATCCAGCTTGCCGGCCAACGTTCCCCGAACTGCTTGACAAGCTTAAAGAGCTGCAAAAACAGTATGCCATTCAGTTCCAGGCTGCCCGATCCACTGCCAAGGAAAGCACCCAAAAGGAGTCCTAG 2316 0.4594 MGTPPTDELVKKIQQLEEGHAHLKQEMSKLKLSDVRHGHHRQRSHSVSPQRSRLGAPPKKRSDAPAAAWKRGSCSFKQSSPLQRESRGGGDPQIHGGGEEAAPRRGPSAVNFTERQYLNILRSMGQSVHILDLNCRIIYWNRSAENLYGYTAEEALGQDGIELLVDPRDLDLANNTVNRVMMGESWTGQFPVKNKTGEKFLAVATNTPFYDDDGSLVGLICVSIDLRPFLEMKVPMPTSVRNIESDSDSGGTRPRSSITNKLGLDTQQPLQASIASKISNLASKVGNKVKSRIWMGENNLDRESGSGESHHSEHSLLESVFLEQREDANSSGASTPRGDVPPSHFGAFSHVEEKSQGKALRESGDESEGKSIHKIIPKAEAWIQRKTLSWPWRTKDREGSDAMNVRVAGSWRQNDQENESVNQKILSSGLKQESQAGESNRPTNNEASGSWSSFNVNSTSSASSCGSAGSGAVNNKVDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVMKRLRHPNILLYMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTSKLDWRRRVHMALDIARGVNYLHHCNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWEIATEKIPWDNLNSMQVIGAVGFMNQRLEIPKNVDPRWASIIESCWHSDPACRPTFPELLDKLKELQKQYAIQFQAARSTAKESTQKES* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0274 771 MobiDBLite consensus disorder prediction 325 373 - -
Gso17g0274 771 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Gso17g0274 771 TIGRFAM sensory_box: PAS domain S-box protein 114 226 IPR000014 -
Gso17g0274 771 MobiDBLite consensus disorder prediction 240 264 - -
Gso17g0274 771 PRINTS Tyrosine kinase catalytic domain signature 567 580 IPR001245 GO:0004672|GO:0006468
Gso17g0274 771 PRINTS Tyrosine kinase catalytic domain signature 606 624 IPR001245 GO:0004672|GO:0006468
Gso17g0274 771 PRINTS Tyrosine kinase catalytic domain signature 653 663 IPR001245 GO:0004672|GO:0006468
Gso17g0274 771 PRINTS Tyrosine kinase catalytic domain signature 672 694 IPR001245 GO:0004672|GO:0006468
Gso17g0274 771 PRINTS Tyrosine kinase catalytic domain signature 716 738 IPR001245 GO:0004672|GO:0006468
Gso17g0274 771 SUPERFAMILY Protein kinase-like (PK-like) 483 744 IPR011009 -
Gso17g0274 771 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 28 770 - -
Gso17g0274 771 SMART serkin_6 493 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0274 771 MobiDBLite consensus disorder prediction 408 452 - -
Gso17g0274 771 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 28 770 - -
Gso17g0274 771 ProSiteProfiles Protein kinase domain profile. 493 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0274 771 CDD PAS 124 226 IPR000014 -
Gso17g0274 771 MobiDBLite consensus disorder prediction 354 373 - -
Gso17g0274 771 Gene3D Phosphorylase Kinase; domain 1 486 570 - -
Gso17g0274 771 Pfam Protein tyrosine and serine/threonine kinase 493 745 IPR001245 GO:0004672|GO:0006468
Gso17g0274 771 CDD STKc_MAP3K-like 499 745 - -
Gso17g0274 771 Gene3D Transferase(Phosphotransferase) domain 1 571 771 - -
Gso17g0274 771 ProSiteProfiles PAS repeat profile. 113 184 IPR000014 -
Gso17g0274 771 SUPERFAMILY PYP-like sensor domain (PAS domain) 113 225 IPR035965 -
Gso17g0274 771 Pfam PAS domain 129 226 IPR000014 -
Gso17g0274 771 MobiDBLite consensus disorder prediction 19 108 - -
Gso17g0274 771 MobiDBLite consensus disorder prediction 19 33 - -
Gso17g0274 771 SMART pas_2 115 182 IPR000014 -
Gso17g0274 771 Coils Coil 6 33 - -
Gso17g0274 771 Gene3D PAS domain 125 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0274 Gso-Chr17 2467969 2476104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0274 1 767 MAP Kinase Kinase Kinase AT3G06620 57.908 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gso17g0274 PK_Tyr_Ser-Thr 4.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0274 - - gmx:100785569 1502.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0274 17 2467969 2476104 Gso17g0274 17 2467969 2476104 ECH
Gso7g2023 7 44253488 44260510 Gso17g0274 17 2467969 2476104 GST
Gso17g0274 17 2467969 2476104 Gso9g0303 9 2894773 2901206 PCT
Gso9g0303 9 2894773 2901206 Gso17g0274 17 2467969 2476104 PCT