Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0270 ATGGTTGACACTTTCAGTATAGAGAGCAGGCTTCTTATAAGAGAGTTTGATGAAGATAGAGATGTTAAGGTGGTGGGGAAGCTTGAGAAGAACTGTGAGATTGGGACTAAAAAGGGGGTCTCCATTTTCACCAACATGATGGGTGACCCTTTATCTAGGATTAGGTTCTATCCCCTTCATGTTATGTTGGTGGCTGAGCTGCTTGAAAGCAAGGAGCTTGTCGGTGTGGTTCGAGGGTGCATTAAGAGTATGCGAACTCCTTCTGAATCATTGCTGAAGATAGGTTGCATACTAGGCCTTAGGGTCTCTCCTACACACAGGAGAAAGGGGATAGGACTAAAACTTGTCAACTCAGTCGAAGAATGGATGCTGAGAAATGGGGCTGAATATGCATTCCTAGCAACAGAAAAGAACAATGATGCCTCTATAAACCTATTTACCAACAAATGCAAATACGTGAGCCTCAGCTCACTTGTCATATTTGTCCATCCAATTATTAGTTTCCCTGCAAAGCACATTCCTAAGGATATAAAAATTGAGAAGGTGAACATGGAGCAGGCAATTTCCTTATACAGAAGAACCCTTAGGGCCAAAGAGTTGTACCCATTAGACATGGATTCTATTTTGAAGGAGAAGCTCAGCTTGGGAACCTGGGTGAGTTATTACAAAGATGAAGGGTGCAGGCTCAACTTGCAGAGGAATATGGTAGAGAGTGTCGATGAAGACATAATTACCAATGAAATCACAAGCTCATGGATCATCTTTAGCATATGGAATACTTGTGAGGCTTATAGGCTTCAACTTAAAAAGTCTCAGCCACTTAGGTTTCTCCATACAACATTAAATCATGCAAGAGACAAAATCTTCCCTTGTCTGAGAATGTCGGTGAGTGAATCACTCTGCACACCCTTTGGGTTTCTCTTCCTCTATGGACTCCATGGAGAGGGAGAGAACCTTGGGGAGTTAATGGAATCCATATGGAGGTTCACATCAAGGTTGGGAGAAAGCTTGAAGGACTGCAGAGTGGTTATAACTGAGTTAGGGTTTGGGGATGCACTTGTAAACCATGTCCCTCTAACAGCTTCTATGTCATGTATCGATGATATCTGGTACACTAAGAGAATTTCAAGCCACAGTGATGAAAACGATGATGAACTGCTGATGAAGAGACAAATCGGGAACGTGTTCGTTGACCCTAGAGATTTTTAG 1209 0.4251 MVDTFSIESRLLIREFDEDRDVKVVGKLEKNCEIGTKKGVSIFTNMMGDPLSRIRFYPLHVMLVAELLESKELVGVVRGCIKSMRTPSESLLKIGCILGLRVSPTHRRKGIGLKLVNSVEEWMLRNGAEYAFLATEKNNDASINLFTNKCKYVSLSSLVIFVHPIISFPAKHIPKDIKIEKVNMEQAISLYRRTLRAKELYPLDMDSILKEKLSLGTWVSYYKDEGCRLNLQRNMVESVDEDIITNEITSSWIIFSIWNTCEAYRLQLKKSQPLRFLHTTLNHARDKIFPCLRMSVSESLCTPFGFLFLYGLHGEGENLGELMESIWRFTSRLGESLKDCRVVITELGFGDALVNHVPLTASMSCIDDIWYTKRISSHSDENDDELLMKRQIGNVFVDPRDF* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0270 402 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 11 234 IPR000182 GO:0016407
Gso17g0270 402 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 9 147 IPR016181 -
Gso17g0270 402 CDD NAT_SF 62 133 - -
Gso17g0270 402 PANTHER N-ACETYLTRANSFERASE HLS1-LIKE ISOFORM X1-RELATED 3 402 - -
Gso17g0270 402 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 3 402 - -
Gso17g0270 402 Gene3D - 38 162 - -
Gso17g0270 402 Pfam Acetyltransferase (GNAT) family 65 150 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0270 Gso-Chr17 2443407 2445353 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Gso17g0270 Acetyltransf_1 1.3e-14 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0270 - - gmx:100814448 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2028 7 44293755 44295625 Gso17g0270 17 2443407 2445353 GST
Gso17g0270 17 2443407 2445353 Gso9g0308 9 2947894 2949598 PCT
Gso9g0308 9 2947894 2949598 Gso17g0270 17 2443407 2445353 PCT