Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0257 ATGGCGAATAACTTAGCGGCGCAACAACTGGTTGGTTCAGAGATACATGGATTCCACACATTGCAAGATTTGGATGTGGGGAGCATTATGGAGGAAGCAAGAACCAGATGGCTCCGTCCCAATGAGATTCATGCCATGCTTTGTAATTACAAGTATTTTACCATTAATGTCAAGCCAGTGAATTTGCCAAAAAGTGGTACTATTGTCTTATTTGATCGCAAGATGCTTAGGAACTTCCGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGGAAAACCGTTAAAGAAGCTCATGAGCACCTAAAAGTTGGTAATGAAGAAAGGATCCATGTATATTATGCACATGGCCAGGATAACCCAAATTTTGTCCGAAGATGTTATTGGCTGCTTGATAAGAGTATGGAACACATAGTCCTTGTTCATTACCGTGAAATACAGGAGATGCAAGGTTCTCCCGTCACTCCTGTAAATTCACACTCCAGTTCTGTCTCTGATCCTCCTGCACCATGGATTTTATCAGAAGAAATAGATTCAGGAACCACAACTGCATATGCTGGTGACACGAGTGCCAATATAAATGTCAAAAGTCATGAACTCAGACTTCATGAGATTAATACACTTGATTGGGATGACCTGGTGGATGCAAATGATCATAACACCTCTACTGTGCCTAATGGAGGTACTGTTCCATATTTTGATCTACAAGATCAAATTTTACTGAATGACAGTTTCAGCAATGTAGCCAACAATCTATCTGCAGACATTCCTTCTTTTGGTAGTCTCACTCAGCCTATTGCTGGGAGCAACAGTGTTCCTTACAATTTTTCAAGTGTTAATCTTCAGACGATGGACGATCAAGCAAATCCACATGAGCAGAGGAATAATACAGTTTCCTTAAGTGGTGTTGATTCCTTGGACACTTTGGTCAATGATAGATTGCAAAGTCAGAACAGCTTTGGAATGTGGGTAAACCCCATCATGTCTGATTCACCATGTTCAGTAGATGACCCAGCTCTTGAATCACCAGTTTCATCCGTTCATGAACCATATTCATCTCTGATAGTGGATAGTCAGCAATCTTCTCTGCCAGGACAAGTATTTACTATCACTGATGTATCCCCTACATGCGTATCTTCCACTGAGAAATCAAAGGTCCTGGTGACTGGATTTTTTCATAAGGACTATATGCACCTTTCAAAGTCCAATCTATTATGTGTCTGTGGTGATGTTAGTGTTCCTGCAGAAATTGTTCAGGTTGGGGTCTACCGGTGCTGGGTATCACCACATTCTCCAGGATTCGTGAATCTCTACATGAGCATTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGTACTCCTGCTTTGCATGATCCCGCCGTTTCAATGGAAGAGAGTGACAATTGGGATGAGTTTCAACTACAAATGAGGCTTGCATATTTGCTCTTTAAACAATTGAACCTTGATGTTATATCCACTAAAGTATCACCCAATAGACTTAAAGAGGCTAGACAATTCGCCCTCAAAACATCATTTATTTCCAATAGTTGGCAATACTTAATCAAGTCAACTGAAGACAACCAAATTCCATTTTCACAAGCAAAAGATGCTCTATTCGGAATTGCATTGAAAAGCAGACTAAAGGAATGGCTTTTGGAAAGAATTGTTTTAGGCTGCAAGACTACTGAATATGATGCTCATGGCCAAAGTGTAATCCATTTGTGTGCAATTTTGGGATATACTTGGGCTGTTTCCTTGTTTTCATGGTCAGGCTTGTCACTGGATTTCCGTGATAGGTCTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAACTCTGTTGTCTGCTGGGGCGAAGCCAAATTTGGTCACTGATCCTACTCCCCAAAATCCTGGTGGATGCACTGCTGCTGATCTTGCTTATATGAGGGGTCATGATGGCTTAGCAGCTTATCTTTCAGAAAAATCTCTGGTTCAGCACTTCAATGACATGAGCTTAGCTGGAAATATCAGCGGCTCACTTGAAACTAGCACGACTGATCCGGTAATTTCTGCAAACCTTACTGAGGACCAGCAGAACCTGAAGGATACATTGGCAGCTTACCGAACTGCTGCTGAGGCAGCTTCCCGCATACATGCTGCATTTAGGGAACACTCTCTAAAACTGAGAACTAAGGCGGTTGCATCTTCCCATCCAGAGGCTCAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCATGCCTTTAGGAACCACAAGACAAAGAAAGTGATGGCAGCTGCTGCTCGCATACAGTGTACATACCGTACATGGAAGATTCGTAAAGAATTTCTCAACATGCGTTGTCAGGCTGTTAAAATTCAAGCTGCGTTCCGGTGCTTTCAAGTGCGGAAGCATTATTGCAAAATTCTTTGGTCTGTTGGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTTTGAAGAGAAGGGGCTTCCGTGGGCTCCAGGTCAAAACTGTCGAAGCGGGAACTGGAGATCAGGATCAGCAAAGTGATGTAGAGGAGGAATTCTTCCGGGCTGGTAGGAAACAAGCTGAAGAACGTGTTGAGAGATCTGTGGTACGTGTGCAGGCTATGTTCCGTTCGAAGAAAGCACAAGAAGAGTACAGGAGGATGAAATTGGCCCTTGATCAAGCAAAGCTTGAGCGAGAATTCGAACGACTTCTTAGTACTGAAGTTGACATGCAACTGAAGACATAG 2769 0.4272 MANNLAAQQLVGSEIHGFHTLQDLDVGSIMEEARTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSMEHIVLVHYREIQEMQGSPVTPVNSHSSSVSDPPAPWILSEEIDSGTTTAYAGDTSANINVKSHELRLHEINTLDWDDLVDANDHNTSTVPNGGTVPYFDLQDQILLNDSFSNVANNLSADIPSFGSLTQPIAGSNSVPYNFSSVNLQTMDDQANPHEQRNNTVSLSGVDSLDTLVNDRLQSQNSFGMWVNPIMSDSPCSVDDPALESPVSSVHEPYSSLIVDSQQSSLPGQVFTITDVSPTCVSSTEKSKVLVTGFFHKDYMHLSKSNLLCVCGDVSVPAEIVQVGVYRCWVSPHSPGFVNLYMSIDGHKPISQVVNFEYRTPALHDPAVSMEESDNWDEFQLQMRLAYLLFKQLNLDVISTKVSPNRLKEARQFALKTSFISNSWQYLIKSTEDNQIPFSQAKDALFGIALKSRLKEWLLERIVLGCKTTEYDAHGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDRSGWTALHWAAYCGREKMVATLLSAGAKPNLVTDPTPQNPGGCTAADLAYMRGHDGLAAYLSEKSLVQHFNDMSLAGNISGSLETSTTDPVISANLTEDQQNLKDTLAAYRTAAEAASRIHAAFREHSLKLRTKAVASSHPEAQARKIVAAMKIQHAFRNHKTKKVMAAAARIQCTYRTWKIRKEFLNMRCQAVKIQAAFRCFQVRKHYCKILWSVGVVEKAVLRWRLKRRGFRGLQVKTVEAGTGDQDQQSDVEEEFFRAGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLALDQAKLEREFERLLSTEVDMQLKT* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0257 922 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Gso17g0257 922 Pfam IQ calmodulin-binding motif 770 788 IPR000048 GO:0005515
Gso17g0257 922 Pfam IQ calmodulin-binding motif 795 811 IPR000048 GO:0005515
Gso17g0257 922 Gene3D - 536 674 IPR036770 -
Gso17g0257 922 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Gso17g0257 922 ProSiteProfiles IQ motif profile. 769 797 IPR000048 GO:0005515
Gso17g0257 922 SMART CG_1_2 29 147 IPR005559 GO:0003677
Gso17g0257 922 SUPERFAMILY E set domains 369 456 IPR014756 -
Gso17g0257 922 ProSiteProfiles Ankyrin repeat region circular profile. 604 632 - -
Gso17g0257 922 Pfam Ankyrin repeats (3 copies) 554 633 IPR002110 GO:0005515
Gso17g0257 922 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 16 922 - -
Gso17g0257 922 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Gso17g0257 922 Gene3D Immunoglobulins 363 459 IPR013783 -
Gso17g0257 922 ProSiteProfiles IQ motif profile. 791 815 IPR000048 GO:0005515
Gso17g0257 922 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 922 - -
Gso17g0257 922 SMART iq_5 871 893 IPR000048 GO:0005515
Gso17g0257 922 SMART iq_5 767 789 IPR000048 GO:0005515
Gso17g0257 922 SMART iq_5 790 812 IPR000048 GO:0005515
Gso17g0257 922 SUPERFAMILY Ankyrin repeat 553 668 IPR036770 -
Gso17g0257 922 Coils Coil 885 905 - -
Gso17g0257 922 Gene3D - 767 815 - -
Gso17g0257 922 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Gso17g0257 922 SMART ANK_2a 643 672 IPR002110 GO:0005515
Gso17g0257 922 SMART ANK_2a 604 633 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0257 Gso-Chr17 2334236 2348299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0257 29 905 CAMTA Transcription Factor Family AT3G16940 54.773 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gso17g0257 CG-1 2.1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0257 K21596 - gmx:100807130 1852.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0257 17 2334236 2348299 Gso17g0257 17 2334236 2348299 ECH
Gso7g2043 7 44389573 44398289 Gso17g0257 17 2334236 2348299 GST
Gso17g0257 17 2334236 2348299 Gso15g1193 15 11836670 11846664 PCT
Gso17g0257 17 2334236 2348299 Gso9g0327 9 3145700 3156017 PCT
Gso15g1193 15 11836670 11846664 Gso17g0257 17 2334236 2348299 PCT
Gso9g0327 9 3145700 3156017 Gso17g0257 17 2334236 2348299 PCT