Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0253 ATGAGAGTTGAGAAAGGAGCAAAAAATGAAGGTGGATATGTTGGTGGTTTCTTCCACTTGTTTGACTGGACCTCAAAATCTCGTAAGAAATTATTTGCAGCCAAGTCAGATTTGCCAGAGTCCTCAAAACAGAGAAGAAAGGTTGATGGCAACATGGCAATGGTGCTGCCCTATCTGGTGGACGAAGATGATGAAATTGGAGTAGGGAAAGGTATTAGAGAATGTAGTGATCATAGTTGTGCTTCATCTGTTATAGATGATGAAGTTTGTGGAACAAGGAGCCCTGGTGTAGTTGCCAGGCTTATGGGATTAGATTCATTGCCCTCTTCCAGTTTTCTGGATCCATATTTTACCCCATACTTTGACAGCCAATCTCTTCAAGATGTGCTGTACTGGAGAACAAAATTTAATCATCTGCATGACCATCAGATCCTGTATTCTGGAAAGTCGATTGAAAAAGCTGAGGGATCTTCTAGGAACTTCATGGAGGAAAAGCCTCAACAGACCCGTAGCAGGCCGATTGAAAAGTTTCAAACAGAAGTAATGCCTCCCAAATCAGCTAAATCTATTCCTTTTGCACACCATAAACTTTTGTCCCCAATTAAGAGCCCTGGCTTTGTTCCAGCAAATAATGCTACTTATATAATGGAGGCTGCTGCAAGAATTATTGAACCTGGCCCCCAAGCTACTACAAAGGCTAAAACCCCTCTGGTAGCATCATCAACAGTATCACTGAGGGTTAGAGATTTTAAAGAAAAAGCGGAGGCTTTACAAAAAGGACCTCTAATTGGGTCATCTTCATTAACTTCTAGAGTTAGAGATCTAAAAGAAAAAAGAGAAACTTCTCATAGAACTATCAGGCTTTCGAAACCTTCTCAAAGGTCGGCTGAGTCTTATGATGCCCAGTATCTAAAGGGACAATCTTTCAACAGAAGTTGGAATGGATCTGTGGATACACAAGTCAGATCATCCTCTCAAGCAGAAGAAGATTCTTCTTTGAAAAATAAAGGGAAGTCTATTTCACTTGCAATCCAAGCAAAAGTGAATGTTCAAAGAAGGGAAGGCTTGAGCTTTAGTAGTGGAAAAAGTTTGGTAGAGCAGAAAGAACAATATGACATTAAAACCCCCCAGCAATCTCTGAAGGCTAATGTTCATAGAAGTTTGCATAAGAAATCCTCTGGTCAAGATGCTTCTGGTGTCCTCAGGCAGAATAATCTGAAACAGAATTGTTCAATGGAAAAAGACAAACTACCATCAAAGCCACTGGTTTCCAATTCAAACGGTAGGAAAGTTGTGACTGGGGATTCCTCTTGTGGATGTCATAGAAGCTCTAGTAGTAAAGCCACTGCAAAATCTAAAGTTGGGCCCAAAAAATCATCCATGAATGTGACAGATAGTGAAAAGGAAGTCTTATTTACTCGTACCAACAATTTCCCAAGGAAGAAGAGGACCACAGACAGGGACTGGAATGATAGGGTTGTTGATAATTTGTTTATTGACAAAACTCAGAAGCCTGTTAAGTCTAATTTAGTTAGTAATAAACACCATGGTGGGGCTGAAGAAGTAAAAAATAAAGACATGGATGTAGTTTCCTTCACATTTACGACGCCATTGACAAGATGCAATTCTGATTTTGAGACATCTGGACAAACTGGCCTGAAGACTGATAGCCTTTCTTTGGATCAGCATATTAGAAGAGTGTTGCTTGACACTGACATTGACACTGATAGTACAAGGACTCTGGTAGGATACAATGCTATTGGTGGCGATGCCTTAGGTATCCTTTTGGATCAGAAGCTGAGGGAATTAACATATGGAGTTGAGAATTCTTGTGATGACTCCTTCAAAGCAAGGTCACCTTCCAGTAATTCTTGTGATGACTCCTTCAAAGCAAGGTCACCTTCCAGTACTGTACCAAAATCAAAAGATCTTGTCTCCACCCTTAATTCAGTCAACCTATTTCTGGAATTGCAACAGAAGACCGACCAAGACATGATCTGGACAGACAAATTATTCAGTAGCCGTGAATGTGACATTTCCTTCACTTGTCTTCCAGAAATATCATCCAAGCATAGACTCTGGATGGAGGAGTGTAAGATCAATCCTATGGAAGCAGAGTTATTCAGTCCCGGACAGCCGAGTCCAATGTCTGTTCTTGACCCTTCTTTCTCTACTCAAAGCTGTGAATCTCCATTCAGCACAAATGCTGCTAGTTCAGTAGATCAAAACAGGAAGCAGGTTGTGGGCTCAGGAAGTGGCTTGAATTCCTCTAGAAAGTACCATCATGCAGAAGCTGATACAGAATTGTTTGATTCAGCATCAAGTTCGACCGTGCTAAAGAAACAAGCAAGTCCATGTTCTCAAATGAAGTTTGGAGGATCAAGAACATGGGAGTTAGATTATGTGAATGATATATTGTGTAATGTGGAGTTGATGTACATGGACTTTTCTCTTGGTAGAGCTCGTGACATTGTGAACCCTCATCTGTTCAACCAGTTGGAAAGTCGAAGAGGAAGAAGGTTTGAGAGTGATGGTGGTGAGTGTAGGATGAGAAGGAAAGTTATATTTGATTGTGTGAGTGAGAGTTTGGACTTAAGATGCAGGCGTTATGTTGGTGGAGGGTACAAAATGTGGGGCAAAGGGGTTGCAATGGTGAAAAGAAATGAATGGTTGGCAAGGGAAGTGTACAAGGAAATTTCAAGCTGGAGGGACATGGGGGATTCAATGGTGGATGAACTCGTAGATAGGGACATGAGCATCGAATATGGGCGATGGCTAGATTTTGAGGTTGATACTTATCAACTTGGTTCACTGGTTGAAGACCAAATATTTAATTCTTTGGTTGATGACTTCGTTGCTGAAATCCTGCAATTATAA 2877 0.4091 MRVEKGAKNEGGYVGGFFHLFDWTSKSRKKLFAAKSDLPESSKQRRKVDGNMAMVLPYLVDEDDEIGVGKGIRECSDHSCASSVIDDEVCGTRSPGVVARLMGLDSLPSSSFLDPYFTPYFDSQSLQDVLYWRTKFNHLHDHQILYSGKSIEKAEGSSRNFMEEKPQQTRSRPIEKFQTEVMPPKSAKSIPFAHHKLLSPIKSPGFVPANNATYIMEAAARIIEPGPQATTKAKTPLVASSTVSLRVRDFKEKAEALQKGPLIGSSSLTSRVRDLKEKRETSHRTIRLSKPSQRSAESYDAQYLKGQSFNRSWNGSVDTQVRSSSQAEEDSSLKNKGKSISLAIQAKVNVQRREGLSFSSGKSLVEQKEQYDIKTPQQSLKANVHRSLHKKSSGQDASGVLRQNNLKQNCSMEKDKLPSKPLVSNSNGRKVVTGDSSCGCHRSSSSKATAKSKVGPKKSSMNVTDSEKEVLFTRTNNFPRKKRTTDRDWNDRVVDNLFIDKTQKPVKSNLVSNKHHGGAEEVKNKDMDVVSFTFTTPLTRCNSDFETSGQTGLKTDSLSLDQHIRRVLLDTDIDTDSTRTLVGYNAIGGDALGILLDQKLRELTYGVENSCDDSFKARSPSSNSCDDSFKARSPSSTVPKSKDLVSTLNSVNLFLELQQKTDQDMIWTDKLFSSRECDISFTCLPEISSKHRLWMEECKINPMEAELFSPGQPSPMSVLDPSFSTQSCESPFSTNAASSVDQNRKQVVGSGSGLNSSRKYHHAEADTELFDSASSSTVLKKQASPCSQMKFGGSRTWELDYVNDILCNVELMYMDFSLGRARDIVNPHLFNQLESRRGRRFESDGGECRMRRKVIFDCVSESLDLRCRRYVGGGYKMWGKGVAMVKRNEWLAREVYKEISSWRDMGDSMVDELVDRDMSIEYGRWLDFEVDTYQLGSLVEDQIFNSLVDDFVAEILQL* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0253 958 MobiDBLite consensus disorder prediction 271 287 - -
Gso17g0253 958 MobiDBLite consensus disorder prediction 709 758 - -
Gso17g0253 958 MobiDBLite consensus disorder prediction 420 467 - -
Gso17g0253 958 Pfam Domain of unknown function (DUF4378) 798 950 IPR025486 -
Gso17g0253 958 PANTHER EXPRESSED PROTEIN 259 956 - -
Gso17g0253 958 PANTHER EXPRESSED PROTEIN 1 259 - -
Gso17g0253 958 MobiDBLite consensus disorder prediction 393 412 - -
Gso17g0253 958 MobiDBLite consensus disorder prediction 715 757 - -
Gso17g0253 958 MobiDBLite consensus disorder prediction 271 298 - -
Gso17g0253 958 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 259 956 - -
Gso17g0253 958 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 259 - -
Gso17g0253 958 Pfam DUF761-associated sequence motif 82 112 IPR032795 -
Gso17g0253 958 MobiDBLite consensus disorder prediction 375 467 - -
Gso17g0253 958 MobiDBLite consensus disorder prediction 614 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0253 Gso-Chr17 2294024 2298872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0253 15 956 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 30.259 7.80e-93 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0253 - - gmx:100804990 1899.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0253 17 2294024 2298872 Gso17g0253 17 2294024 2298872 ECH
Gso7g2049 7 44448782 44454967 Gso17g0253 17 2294024 2298872 GST
Gso17g0253 17 2294024 2298872 Gso15g1199 15 11920460 11925821 PCT
Gso17g0253 17 2294024 2298872 Gso9g0332 9 3216405 3221905 PCT
Gso15g1199 15 11920460 11925821 Gso17g0253 17 2294024 2298872 PCT
Gso9g0332 9 3216405 3221905 Gso17g0253 17 2294024 2298872 PCT