Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0250 ATGTCGCTCAGGCCAAATGCCAGAACCGAGATTCGCCGCAACCGTTACAAGGTCGCCGTCGACGCCGACGAGGGCCGCCGGAGAAGAGAGGACAACATGGTCGAGATCCGCAAGAGCAAGCGCGAAGAGAGTTTGCTCAAGAAGCGTCGTGAAGGCCTCCAAGCTCAGCAACAGTTTCCCGCTCCTCTTCAGAACTCCACCGTCGACAAGAAGCTGGAGAGTCTTCCTGCCATGGTTGCTGGAGTTTGGTCGGATGATAATAGTATTCAACTTGAAGCCACTACGCAATTTCGCAAGCTGCTTTCGATTGAACGGAGCCCTCCGATTGAGGAAGTTATTCAAGCTGGTGTTGTTCCACGTTTTGTTGAGTTTCTTGTTAGAGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCGTGGGCTCTCACAAACATTGCATCTGGGACTTCTGAGAACACTAAGGTGGTAATTGATCATGGGGCAGTTCCTATATTTGTCAAGCTACTTAGTTCACCTAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTAGAGATCTAGTGCTCAGCCAAGGTGCCCTCGTCCCACTGTTGGCCCAGTTGAATGAGCATGCAAAACTTTCAATGCTGAGAAATGCCACATGGACATTATCTAACTTTTGCAGGGGTAAGCCACAGCCTCCGTTTGAGCAGGTGAGACCGGCACTTCCAGCACTCGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTTTTGACAGATGCTTGCTGGGCATTATCATATCTCTCTGATGGCACAAATGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTGCCAGATTGGTGCAGCTTCTCATACACCCATCTCCCTCAGTGCTGATTCCTGCTCTTCGTACAGTGGGAAATATTGTGACTGGAGATGATATGCAGACTCAGTGTATTATCAATCATGGTGCACTCCCCTGCCTTTTGAACCTGTTGACAAATAATCATAAAAAAAGCATTAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAAGAACAGATACAGACTGTTATTGAAGCTGGTCTGGTTGCACCCCTTGTCAATCTTCTTCAAAATGCGGAATTTGACATTAAAAAGGAAGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGAATTCATGAGCAGATCAAGTACTTGGTGAGTCAGGGTTGCATAAAGCCTCTTTGTGATCTTCTTGTTTGCCCAGACCCAAGAATTGTTACTGTCTGTTTAGAAGGCCTAGAGAATATTCTGAAGGTTGGAGAAGCTGAGAAGAGCCTAGGTAACACTGGAGATGTTAACGAGTATGCACAGATGATAGATGATGCTGAGGGATTGGAGAAGATTGAAAACCTACAGAGTCATGACAACAATGAAATATATGAAAAGGCTGTTAAAATTCTTGAAACATATTGGTTGGAAGAAGAAGATGAGACACTACCTTCAGGAGATGGTGCTCAACCTGGTTTCAATTTCGGAAACAATGAGCTTCCAGTCCCATCTGGTGGATTCAACTTCAGCTGA 1593 0.4583 MSLRPNARTEIRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQQFPAPLQNSTVDKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLIHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQTVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGIHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNEYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGAQPGFNFGNNELPVPSGGFNFS* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0250 530 MobiDBLite consensus disorder prediction 502 530 - -
Gso17g0250 530 PIRSF Importin_alpha 2 529 IPR024931 GO:0005737|GO:0006606|GO:0061608
Gso17g0250 530 PANTHER IMPORTIN SUBUNIT ALPHA 2 521 - -
Gso17g0250 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Gso17g0250 530 Pfam Atypical Arm repeat 457 501 IPR032413 -
Gso17g0250 530 PANTHER IMPORTIN ALPHA 2 521 - -
Gso17g0250 530 Pfam Armadillo/beta-catenin-like repeat 317 357 IPR000225 GO:0005515
Gso17g0250 530 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Gso17g0250 530 Pfam Armadillo/beta-catenin-like repeat 404 440 IPR000225 GO:0005515
Gso17g0250 530 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Gso17g0250 530 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Gso17g0250 530 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Gso17g0250 530 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Gso17g0250 530 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Gso17g0250 530 Coils Coil 36 56 - -
Gso17g0250 530 Gene3D - 73 496 IPR011989 -
Gso17g0250 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Gso17g0250 530 Gene3D - 11 50 IPR036975 GO:0006606
Gso17g0250 530 SUPERFAMILY ARM repeat 12 500 IPR016024 -
Gso17g0250 530 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Gso17g0250 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Gso17g0250 530 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Gso17g0250 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Gso17g0250 530 SMART arm_5 316 357 IPR000225 GO:0005515
Gso17g0250 530 SMART arm_5 105 146 IPR000225 GO:0005515
Gso17g0250 530 SMART arm_5 359 399 IPR000225 GO:0005515
Gso17g0250 530 SMART arm_5 189 231 IPR000225 GO:0005515
Gso17g0250 530 SMART arm_5 233 272 IPR000225 GO:0005515
Gso17g0250 530 SMART arm_5 148 188 IPR000225 GO:0005515
Gso17g0250 530 SMART arm_5 402 442 IPR000225 GO:0005515
Gso17g0250 530 SMART arm_5 274 314 IPR000225 GO:0005515
Gso17g0250 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0250 Gso-Chr17 2273937 2278457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0250 131 391 U-box Gene Family AT3G46510 24.904 3.72e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0250 K15042 - gmx:100792804 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0250 17 2273937 2278457 Gso17g0250 17 2273937 2278457 ECH
Gso17g0250 17 2273937 2278457 Gso19g1937 19 48061103 48067068 ECH
Gso7g2051 7 44472513 44476984 Gso17g0250 17 2273937 2278457 GST
Gso17g0250 17 2273937 2278457 Gso15g1202 15 11984786 11989166 PCT
Gso17g0250 17 2273937 2278457 Gso9g0335 9 3257290 3261891 PCT
Gso15g1202 15 11984786 11989166 Gso17g0250 17 2273937 2278457 PCT
Gso9g0335 9 3257290 3261891 Gso17g0250 17 2273937 2278457 PCT